C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stathmin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374291 STMN1-005 ENSG00000117632 9606 - 1:25900741-25905128 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374291
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374291 5.575±0.00 25.857±0.00 5.202±0.00 253.398±135.86 12.107±5.57 22.010±17.87 4.238±3.07 9.362±7.03 2.059±0.56 13.854±10.49 1.778±0.96 86.560±81.63 58.813±39.41 181.006±119.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003Q2 CIL_0003Q2_0002 CGP 1:25861210-25906991

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 TAS signal transducer activity
GO:0005622 IDA intracellular
GO:0005874 IEA microtubule
GO:0007019 IDA microtubule depolymerization
GO:0007052 IDA mitotic spindle organization
GO:0007165 NAS signal transduction
GO:0009615 IEP response to virus
GO:0015631 IDA tubulin binding
GO:0031110 IEA regulation of microtubule polymerization or depolymerization
GO:0035556 TAS intracellular signal transduction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030636 Stmn1-001 protein_coding Mus_musculus 0 887
ENSMUST00000105867 Stmn1-005 protein_coding Mus_musculus 0 839
ENSMUST00000105868 Stmn1-004 protein_coding Mus_musculus 0 702
ENSMUST00000120560 Gm11223-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000127279 Stmn1-003 protein_coding Mus_musculus 0 429

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