C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stathmin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357865 STMN1-003 ENSG00000117632 9606 - 1:25900595-25906991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000357865
Transcript ID Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000357865 4.770±0.00 1.499±0.00 6.226±0.00 5.847±5.29 5.847±0.00 1.322±0.62 94.800±51.40 65.407±26.49 104.283±72.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003Q2 CIL_0003Q2_0002 CGP 1:25861210-25906991

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 TAS signal transducer activity
GO:0005622 IDA intracellular
GO:0005874 IEA microtubule
GO:0007019 IDA microtubule depolymerization
GO:0007052 IDA mitotic spindle organization
GO:0007165 NAS signal transduction
GO:0009615 IEP response to virus
GO:0015631 IDA tubulin binding
GO:0031110 IEA regulation of microtubule polymerization or depolymerization
GO:0035556 TAS intracellular signal transduction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030636 Stmn1-001 protein_coding Mus_musculus 0 1027
ENSMUST00000105867 Stmn1-005 protein_coding Mus_musculus 0 841
ENSMUST00000105868 Stmn1-004 protein_coding Mus_musculus 0 704
ENSMUST00000120560 Gm11223-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000127279 Stmn1-003 protein_coding Mus_musculus 0 431

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