C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 signalosome subunit 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121022 COPS5 9606 - 8:67043079-67083783 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357849 COPS5-001 67043079-67062317 protein_coding
  ENST00000517406 COPS5-008 67059416-67062153 nonsense_mediated_decay
  ENST00000517736 COPS5-010 67043079-67064943 protein_coding
  ENST00000517793 COPS5-005 67058098-67064638 processed_transcript
  ENST00000518374 COPS5-004 67043082-67062323 nonsense_mediated_decay
  ENST00000518747 COPS5-006 67056533-67064274 protein_coding
  ENST00000518768 COPS5-011 67061951-67083783 processed_transcript
  ENST00000519057 COPS5-013 67061344-67083744 processed_transcript
  ENST00000519963 COPS5-007 67060473-67083733 processed_transcript
  ENST00000521386 COPS5-003 67043082-67061629 retained_intron
  ENST00000521509 COPS5-002 67043079-67062336 retained_intron
  ENST00000523086 COPS5-009 67043079-67056560 processed_transcript
  ENST00000523890 COPS5-012 67045810-67062029 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357849ENST00000521386ENST00000523890
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357849 9.542±0.00 10.721±0.00 17.032±1.87 21.603±0.00 21.765±0.00 21.920±9.61 20.060±9.43 16.587±0.00 12.177±0.00 9.702±0.00 20.760±4.43 24.058±3.88 48.960±0.00
ENST00000521386 N/A 2.085±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523890 N/A N/A 21.481±0.00 N/A N/A 20.642±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BD CIL_0003BD_0001 CGP 8:66946501-67056604
CIL_0003BC CIL_0003BC_0001 CGP 8:66964099-67083783
CIL_0003BF CIL_0003BF_0001 CGP 8:67043079-67196263

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000338 IMP protein deneddylation
GO:0003713 TAS transcription coactivator activity
GO:0003743 TAS translation initiation factor activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005852 TAS eukaryotic translation initiation factor 3 complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006412 TAS translation
GO:0006413 TAS translational initiation
GO:0006508 IEA proteolysis
GO:0008021 IDA synaptic vesicle
GO:0008180 IDA COP9 signalosome
GO:0008237 IMP metallopeptidase activity
GO:0010388 IDA cullin deneddylation
GO:0016579 IDA protein deubiquitination
GO:0030054 IEA cell junction
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046328 IDA regulation of JNK cascade
GO:0046872 IEA metal ion binding
GO:0051726 IEA regulation of cell cycle
GO:1990182 IDA exosomal secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057624 cops5 COP9 constitutive photomorphogenic homolog subunit 5 protein_coding Danio_rerio
ENSMUSG00000025917 Cops5 COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) protein_coding Mus_musculus

Loading