C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003BD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000261787-ENSG00000178125 CGP 9606 8:66946501-67056604
GeneTranscriptPositionBiotype
ENSG00000121022 (COPS5)
COP9 signalosome subunit 5 		ENST00000357849 (COPS5-001) 67043079-67062317 protein_coding
ENST00000517406 (COPS5-008) 67059416-67062153 nonsense_mediated_decay
ENST00000517736 (COPS5-010) 67043079-67064943 protein_coding
ENST00000517793 (COPS5-005) 67058098-67064638 processed_transcript
ENST00000518374 (COPS5-004) 67043082-67062323 nonsense_mediated_decay
ENST00000518747 (COPS5-006) 67056533-67064274 protein_coding
ENST00000518768 (COPS5-011) 67061951-67083783 processed_transcript
ENST00000519057 (COPS5-013) 67061344-67083744 processed_transcript
ENST00000519963 (COPS5-007) 67060473-67083733 processed_transcript
ENST00000521386 (COPS5-003) 67043082-67061629 retained_intron
ENST00000521509 (COPS5-002) 67043079-67062336 retained_intron
ENST00000523086 (COPS5-009) 67043079-67056560 processed_transcript
ENST00000523890 (COPS5-012) 67045810-67062029 nonsense_mediated_decay
ENSG00000253223 (RP11-409C19.2)
 ENST00000519029 (RP11-409C19.2-001) 66984135-66986187 processed_pseudogene
ENSG00000261787 (TCF24)
transcription factor 24 		ENST00000563496 (TCF24-001) 66946501-66962590 protein_coding
ENST00000566129 (TCF24-002) 66947590-66955117 processed_transcript
CIL_0003BD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000099032-ENSMUSG00000025916 CGP 10090 1:9960163-10009136
GeneTranscriptPositionBiotype
ENSMUSG00000025916 (Ppp1r42)
protein phosphatase 1, regulatory subunit 42 		ENSMUST00000027049 (Ppp1r42-001) 9968624-10009136 protein_coding
ENSMUST00000124874 (Ppp1r42-006) 9968624-10003453 nonsense_mediated_decay
ENSMUST00000130102 (Ppp1r42-002) 9968825-10009130 nonsense_mediated_decay
ENSMUST00000147000 (Ppp1r42-005) 9968624-9985692 protein_coding
ENSMUST00000155163 (Ppp1r42-003) 9995063-10009130 retained_intron
ENSMUST00000176398 (Ppp1r42-007) 9978816-10009130 protein_coding
ENSMUSG00000087199 (Gm15818)
predicted gene 15818 		ENSMUST00000134692 (Gm15818-001) 9982387-9992366 antisense
ENSMUSG00000099032 (Tcf24)
transcription factor 24 		ENSMUST00000097824 (Tcf24-201) 9960171-9962809 protein_coding
ENSMUST00000185184 (Tcf24-001) 9960163-9967932 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BD_0001ENSG00000121022ENST00000357849ENST00000517406ENST00000517736ENST00000517793ENST00000518374ENST00000518747ENST00000518768ENST00000519057ENST00000519963ENST00000521386ENST00000521509ENST00000523086ENST00000523890ENSG00000253223ENST00000519029ENSG00000261787ENST00000563496ENST00000566129CIL_0003BD_0002ENSMUSG00000025916ENSMUST00000027049ENSMUST00000124874ENSMUST00000130102ENSMUST00000147000ENSMUST00000155163ENSMUST00000176398ENSMUSG00000087199ENSMUST00000134692ENSMUSG00000099032ENSMUST00000097824ENSMUST00000185184
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BD_0001ENSG00000121022ENST00000357849ENST00000521386ENST00000523890ENSG00000253223ENST00000519029ENSG00000261787ENST00000563496ENST00000566129CIL_0003BD_0002ENSMUSG00000025916ENSMUST00000027049ENSMUST00000124874ENSMUST00000130102ENSMUST00000147000ENSMUST00000155163ENSMUST00000176398ENSMUSG00000087199ENSMUST00000134692ENSMUSG00000099032ENSMUST00000097824ENSMUST00000185184
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121022 ENST00000357849 9.542±0.00 10.721±0.00 N/A 17.032±1.87 21.603±0.00 21.765±0.00 21.920±9.61 20.060±9.43 16.587±0.00 12.177±0.00 9.702±0.00 20.760±4.43 24.058±3.88 48.960±0.00
ENST00000517406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521386 N/A 2.085±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523890 N/A N/A N/A 21.481±0.00 N/A N/A 20.642±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000253223 ENST00000519029 0.032±0.00 N/A 0.016±0.00 0.014±0.00 0.041±0.00 N/A 0.071±0.00 0.116±0.00 N/A 0.019±0.00 N/A 0.061±0.03 0.027±0.00 0.485±0.33
ENSG00000261787 ENST00000563496 0.005±0.00 N/A N/A 0.045±0.00 N/A 0.020±0.00 0.203±0.17 0.148±0.00 0.008±0.00 0.004±0.00 N/A 0.019±0.00 0.017±0.00 0.332±0.11
ENST00000566129 N/A N/A 0.437±0.00 N/A 0.013±0.00 0.025±0.00 0.094±0.00 N/A N/A N/A 0.509±0.00 0.037±0.00 N/A 0.226±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025916 ENSMUST00000027049 N/A N/A N/A 0.067±0.04 N/A N/A N/A 0.034±0.00 0.048±0.00 0.161±0.00 0.105±0.01 0.206±0.12 0.020±0.00 2.764±0.82
ENSMUST00000124874 N/A N/A 0.058±0.00 N/A N/A N/A N/A N/A 0.095±0.03 N/A 0.031±0.01 0.440±0.00 N/A 3.216±0.00
ENSMUST00000130102 N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A
ENSMUST00000147000 N/A N/A N/A N/A N/A N/A N/A 0.133±0.00 0.347±0.25 N/A 0.083±0.03 N/A 0.047±0.00 N/A
ENSMUST00000155163 N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A 13.102±2.80
ENSMUST00000176398 N/A N/A N/A 0.142±0.09 N/A N/A N/A N/A 0.026±0.00 N/A 0.114±0.05 N/A 0.057±0.00 19.580±15.89
ENSMUSG00000087199 ENSMUST00000134692 N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A 0.166±0.10 0.021±0.00 0.196±0.13
ENSMUSG00000099032 ENSMUST00000097824 0.114±0.00 N/A 0.099±0.03 0.136±0.07 0.406±0.28 0.181±0.00 0.069±0.04 1.598±0.11 1.227±1.24 N/A 0.025±0.01 0.829±0.09 0.630±0.41 0.284±0.05
ENSMUST00000185184 0.229±0.24 5.237±1.99 N/A 0.112±0.12 0.388±0.22 0.200±0.07 0.045±0.03 1.369±0.77 2.343±1.99 0.472±0.04 0.018±0.00 1.988±1.67 1.709±1.47 0.649±0.40

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