C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor III A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016503 Gtf3a 10090 + 5:146948657-146955614 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000132102 Gtf3a-003 146948705-146955606 protein_coding
  ENSMUST00000133296 Gtf3a-004 146950007-146955603 retained_intron
  ENSMUST00000133682 Gtf3a-002 146948698-146955603 retained_intron
  ENSMUST00000146511 Gtf3a-001 146948657-146955614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000133296ENSMUST00000146511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000133296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.656±0.45 N/A N/A
ENSMUST00000146511 22.057±8.68 52.368±43.92 16.068±1.96 13.631±7.02 54.621±30.91 17.653±6.68 6.300±1.02 26.962±10.76 13.889±6.46 16.859±16.59 10.413±0.82 49.400±38.25 19.202±8.75 3.703±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MH CIL_0004MH_0002 CGP 5:146845071-146955614
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0000G7 CIL_0000G7_0003 CGP 5:146948657-146963800

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030267 gtf3aa general transcription factor IIIAa protein_coding Danio_rerio
ENSDARG00000071583 gtf3ab general transcription factor IIIA, b protein_coding Danio_rerio
ENSG00000122034 GTF3A general transcription factor IIIA protein_coding Homo_sapiens

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