C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcospan
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123096 SSPN 9606 + 12:26121991-26299290 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000242729 SSPN-001 26195496-26232955 protein_coding
  ENST00000422622 SSPN-003 26195340-26234779 protein_coding
  ENST00000534829 SSPN-005 26122052-26299290 processed_transcript
  ENST00000535504 SSPN-008 26195673-26252920 protein_coding
  ENST00000538142 SSPN-007 26121991-26231014 protein_coding
  ENST00000539019 SSPN-002 26134964-26181284 processed_transcript
  ENST00000540266 SSPN-009 26134967-26231146 protein_coding
  ENST00000544231 SSPN-006 26195356-26287738 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000242729ENST00000422622
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000242729 N/A N/A N/A N/A N/A N/A N/A N/A 2.213±0.00 N/A N/A
ENST00000422622 3.136±0.00 4.457±0.00 3.566±0.00 4.457±0.00 1.396±0.00 0.087±0.00 0.127±0.00 1.059±0.00 N/A 3.631±0.00 2.126±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004X8 CIL_0004X8_0001 CGP 12:25959029-26125127
CIL_0004X9 CIL_0004X9_0001 CGP 12:26120026-26299290
CIL_0004XE CIL_0004XE_0001 CGP 12:26121991-26833198

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005887 TAS integral component of plasma membrane
GO:0006936 TAS muscle contraction
GO:0007155 TAS cell adhesion
GO:0016010 TAS dystrophin-associated glycoprotein complex
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030133 IDA transport vesicle
GO:0042383 IEA sarcolemma
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041747 sspn sarcospan (Kras oncogene-associated gene) protein_coding Danio_rerio
ENSMUSG00000030255 Sspn sarcospan protein_coding Mus_musculus

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