C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcospan
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422622 SSPN-003 ENSG00000123096 9606 + 12:26195340-26234779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENST00000422622
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000422622 3.136±0.00 4.457±0.00 3.566±0.00 4.457±0.00 1.396±0.00 0.087±0.00 0.127±0.00 1.059±0.00 3.631±0.00 2.126±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004X8 CIL_0004X8_0001 CGP 12:25959029-26125127
CIL_0004X9 CIL_0004X9_0001 CGP 12:26120026-26299290
CIL_0004XE CIL_0004XE_0001 CGP 12:26121991-26833198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005887 TAS integral component of plasma membrane
GO:0006936 TAS muscle contraction
GO:0007155 TAS cell adhesion
GO:0016010 TAS dystrophin-associated glycoprotein complex
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030133 IDA transport vesicle
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111702 Sspn-002 protein_coding Mus_musculus 0 459
ENSMUST00000111701 Sspn-003 protein_coding Mus_musculus 0 457
ENSMUST00000032383 Sspn-001 protein_coding Mus_musculus 0 457

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