C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcospan
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030255 Sspn 10090 + 6:145931641-145965223 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032383 Sspn-001 145934122-145965223 protein_coding
  ENSMUST00000111701 Sspn-003 145953429-145965223 protein_coding
  ENSMUST00000111702 Sspn-002 145931641-145965223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032383ENSMUST00000111701ENSMUST00000111702
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032383 11.558±2.02 8.903±0.70 19.829±3.04 0.794±0.37 10.197±1.72 3.924±0.15 35.686±1.44 1.712±0.19 0.214±0.09 7.240±0.19 16.349±3.40 10.098±2.79 0.351±0.37 0.531±0.14
ENSMUST00000111701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.07
ENSMUST00000111702 N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.04 N/A N/A N/A 0.350±0.12 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004X9 CIL_0004X9_0002 CGP 6:145858243-145965223
CIL_0004XE CIL_0004XE_0002 CGP 6:145931641-146502223

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0030133 IEA transport vesicle
GO:0042383 IDA sarcolemma

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041747 sspn sarcospan (Kras oncogene-associated gene) protein_coding Danio_rerio
ENSG00000123096 SSPN sarcospan protein_coding Homo_sapiens

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