C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004XE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123096-ENSG00000123104 CGP 9606 12:26121991-26833198
GeneTranscriptPositionBiotype
ENSG00000123095 (BHLHE41)
basic helix-loop-helix family, member e41 		ENST00000242728 (BHLHE41-001) 26120026-26125127 protein_coding
ENST00000394326 (BHLHE41-003) 26122958-26123768 retained_intron
ENST00000541271 (BHLHE41-002) 26123988-26124899 retained_intron
ENSG00000123096 (SSPN)
sarcospan 		ENST00000242729 (SSPN-001) 26195496-26232955 protein_coding
ENST00000422622 (SSPN-003) 26195340-26234779 protein_coding
ENST00000534829 (SSPN-005) 26122052-26299290 processed_transcript
ENST00000535504 (SSPN-008) 26195673-26252920 protein_coding
ENST00000538142 (SSPN-007) 26121991-26231014 protein_coding
ENST00000539019 (SSPN-002) 26134964-26181284 processed_transcript
ENST00000540266 (SSPN-009) 26134967-26231146 protein_coding
ENST00000544231 (SSPN-006) 26195356-26287738 processed_transcript
ENSG00000212549 (RNA5SP354)
RNA, 5S ribosomal pseudogene 354 		ENST00000391247 (RNA5SP354-201) 26373598-26373733 rRNA
ENSG00000234428 (RP11-666F17.1)
 ENST00000414098 (RP11-666F17.1-001) 26623369-26649479 antisense
ENSG00000255858 (RP11-612B6.1)
 ENST00000539552 (RP11-612B6.1-001) 26315715-26317813 lincRNA
ENSG00000255968 (RP11-513G19.1)
 ENST00000535324 (RP11-513G19.1-001) 26318953-26421462 antisense
ENSG00000256234 (RP11-283G6.4)
 ENST00000540392 (RP11-283G6.4-001) 26211164-26335856 antisense
ENSG00000256640 (RP11-666F17.2)
 ENST00000541141 (RP11-666F17.2-001) 26800843-26801302 processed_pseudogene
ENSG00000256894 (RP11-283G6.3)
 ENST00000535914 (RP11-283G6.3-001) 26125155-26126084 antisense
ENST00000545819 (RP11-283G6.3-002) 26125313-26126617 antisense
ENSG00000278095 (RP11-283G6.6)
 ENST00000621404 (RP11-283G6.6-001) 26273329-26273900 antisense
CIL_0004XE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030255-ENSMUSG00000030287 CGP 10090 6:145931641-146502223
GeneTranscriptPositionBiotype
ENSMUSG00000030255 (Sspn)
sarcospan 		ENSMUST00000032383 (Sspn-001) 145934122-145965223 protein_coding
ENSMUST00000111701 (Sspn-003) 145953429-145965223 protein_coding
ENSMUST00000111702 (Sspn-002) 145931641-145965223 protein_coding
ENSMUSG00000030287 (Itpr2)
inositol 1,4,5-triphosphate receptor 2 		ENSMUST00000053273 (Itpr2-002) 146108299-146502099 protein_coding
ENSMUST00000079573 (Itpr2-001) 146108299-146502178 protein_coding
ENSMUST00000111673 (Itpr2-003) 146421418-146501878 processed_transcript
ENSMUST00000131890 (Itpr2-006) 146357700-146396986 protein_coding
ENSMUST00000137938 (Itpr2-007) 146120595-146147208 processed_transcript
ENSMUST00000139732 (Itpr2-004) 146373123-146502223 protein_coding
ENSMUST00000144557 (Itpr2-009) 146290486-146294284 processed_transcript
ENSMUST00000145418 (Itpr2-005) 146382134-146502178 retained_intron
ENSMUST00000155339 (Itpr2-008) 146180336-146196960 processed_transcript
ENSMUSG00000082120 (Gm15720)
predicted gene 15720 		ENSMUST00000117133 (Gm15720-001) 146463326-146463607 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XE_0001ENSG00000123095ENST00000242728ENST00000394326ENST00000541271ENSG00000123096ENST00000242729ENST00000422622ENST00000534829ENST00000535504ENST00000538142ENST00000539019ENST00000540266ENST00000544231ENSG00000212549ENST00000391247ENSG00000234428ENST00000414098ENSG00000255858ENST00000539552ENSG00000255968ENST00000535324ENSG00000256234ENST00000540392ENSG00000256640ENST00000541141ENSG00000256894ENST00000535914ENST00000545819ENSG00000278095ENST00000621404CIL_0004XE_0002ENSMUSG00000030255ENSMUST00000032383ENSMUST00000111701ENSMUST00000111702ENSMUSG00000030287ENSMUST00000053273ENSMUST00000079573ENSMUST00000111673ENSMUST00000131890ENSMUST00000137938ENSMUST00000139732ENSMUST00000144557ENSMUST00000145418ENSMUST00000155339ENSMUSG00000082120ENSMUST00000117133
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XE_0001ENSG00000123095ENST00000242728ENST00000541271ENSG00000123096ENST00000242729ENST00000422622ENSG00000212549ENST00000391247ENSG00000234428ENST00000414098ENSG00000255858ENST00000539552ENSG00000255968ENST00000535324ENSG00000256234ENST00000540392ENSG00000256640ENST00000541141ENSG00000256894ENST00000535914ENST00000545819ENSG00000278095ENST00000621404CIL_0004XE_0002ENSMUSG00000030255ENSMUST00000032383ENSMUST00000111701ENSMUST00000111702ENSMUSG00000030287ENSMUST00000053273ENSMUST00000079573ENSMUST00000131890ENSMUSG00000082120ENSMUST00000117133
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000123095 ENST00000242728 4.127±0.00 6.369±0.00 1.131±0.00 18.336±11.88 12.235±7.44 3.033±1.63 3.456±0.00 1.794±1.77 2.037±1.95 3.290±0.25 9.592±0.00 5.755±3.20 4.724±2.42 5.154±1.92
ENST00000394326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.523±0.00 12.095±0.00 4.526±0.00
ENSG00000123096 ENST00000242729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.213±0.00 N/A N/A N/A
ENST00000422622 3.136±0.00 4.457±0.00 N/A N/A 3.566±0.00 4.457±0.00 1.396±0.00 0.087±0.00 0.127±0.00 1.059±0.00 N/A 3.631±0.00 N/A 2.126±0.00
ENST00000534829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212549 ENST00000391247 0.594±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234428 ENST00000414098 0.115±0.00 0.089±0.00 N/A 0.081±0.02 0.205±0.00 N/A 0.040±0.00 0.252±0.00 0.502±0.47 0.275±0.00 0.657±0.00 0.199±0.22 0.458±0.00 0.154±0.07
ENSG00000255858 ENST00000539552 N/A 0.562±0.00 N/A 0.041±0.00 N/A N/A N/A N/A N/A 2.410±0.00 0.278±0.00 N/A N/A N/A
ENSG00000255968 ENST00000535324 0.176±0.00 0.411±0.00 0.282±0.00 0.206±0.11 N/A 0.202±0.00 0.066±0.02 0.063±0.00 0.112±0.00 0.028±0.00 N/A 0.317±0.27 0.068±0.01 0.077±0.04
ENSG00000256234 ENST00000540392 N/A N/A 0.797±0.00 N/A 0.142±0.00 N/A N/A N/A 0.054±0.00 0.679±0.00 N/A N/A N/A N/A
ENSG00000256640 ENST00000541141 N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A 0.253±0.00 N/A N/A N/A N/A
ENSG00000256894 ENST00000535914 0.131±0.00 0.084±0.00 N/A N/A 0.454±0.32 N/A N/A N/A N/A 0.526±0.00 N/A 0.677±0.00 0.160±0.00 0.141±0.00
ENST00000545819 0.086±0.00 0.441±0.00 0.889±0.00 1.507±0.00 0.637±0.14 0.100±0.00 0.346±0.18 0.441±0.00 0.165±0.00 0.487±0.00 0.312±0.00 0.434±0.22 N/A 0.653±0.00
ENSG00000278095 ENST00000621404 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.057±0.00 N/A 0.052±0.00 0.117±0.03 0.060±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030255 ENSMUST00000032383 11.558±2.02 8.903±0.70 19.829±3.04 0.794±0.37 10.197±1.72 3.924±0.15 35.686±1.44 1.712±0.19 0.214±0.09 7.240±0.19 16.349±3.40 10.098±2.79 0.351±0.37 0.531±0.14
ENSMUST00000111701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.07
ENSMUST00000111702 N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.04 N/A N/A N/A 0.350±0.12 N/A
ENSMUSG00000030287 ENSMUST00000053273 1.509±0.07 1.229±0.11 0.614±0.02 0.442±0.46 2.388±0.84 1.291±0.40 1.176±0.58 3.620±1.21 0.845±0.68 2.397±0.66 0.435±0.15 4.201±2.65 1.807±1.90 0.527±0.27
ENSMUST00000079573 3.980±1.76 1.965±0.19 0.282±0.00 0.213±0.00 2.511±1.23 1.546±0.32 0.537±0.33 6.907±2.78 0.796±0.58 5.772±1.15 0.215±0.01 4.033±1.83 0.412±0.17 0.551±0.00
ENSMUST00000111673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131890 N/A 3.763±0.00 N/A N/A 3.027±0.00 1.746±0.00 N/A N/A N/A N/A N/A 7.214±0.36 N/A N/A
ENSMUST00000137938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082120 ENSMUST00000117133 0.566±0.24 N/A 0.319±0.06 0.582±0.51 N/A N/A N/A 0.340±0.00 0.210±0.14 N/A N/A 1.293±0.00 0.615±0.43 0.420±0.18

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