C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547476 TUBA1B-007 ENSG00000123416 9606 - 12:49129286-49131397 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000A CIL_00000A_0001 CGP 12:49096551-49131397
CIL_00000B CIL_00000B_0001 CGP 12:49127782-49189324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 520
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 520
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 514
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 455
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 446
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 431
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 375
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 370
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 364
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 364
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 355
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 342
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 303
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 303
ENSMUST00000119255 Gm11870-001 processed_pseudogene Mus_musculus 0 292
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 217
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 4.06377e-44 182

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