C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550367 TUBA1B-010 ENSG00000123416 9606 - 12:49128454-49131395 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000A CIL_00000A_0001 CGP 12:49096551-49131397
CIL_00000B CIL_00000B_0001 CGP 12:49127782-49189324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 730
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 651
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 645
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 569
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 507
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 0 477
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 475
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 466
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 466
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 466
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 466
ENSMUST00000134214 Tuba1a-002 processed_transcript Mus_musculus 0 442
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 438
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 405
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 379
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 368
ENSMUST00000119255 Gm11870-001 processed_pseudogene Mus_musculus 0 353
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 340
ENSDART00000053304 protein_coding Danio_rerio 0 326
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 322
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 292
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 0 228
ENSMUST00000122283 Gm15599-001 unprocessed_pseudogene Mus_musculus 0 204

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