C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCCTC-binding factor (zinc finger protein)-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124092 CTCFL 9606 - 20:57495966-57525652 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243914 CTCFL-001 57497168-57525209 protein_coding
  ENST00000371196 CTCFL-003 57497168-57525579 protein_coding
  ENST00000422109 CTCFL-018 57499554-57524867 nonsense_mediated_decay
  ENST00000422869 CTCFL-016 57506742-57525652 protein_coding
  ENST00000423479 CTCFL-020 57495966-57525107 protein_coding
  ENST00000426658 CTCFL-017 57499554-57524867 nonsense_mediated_decay
  ENST00000429804 CTCFL-005 57497164-57525652 protein_coding
  ENST00000432255 CTCFL-006 57506742-57524867 protein_coding
  ENST00000433949 CTCFL-021 57499554-57525107 protein_coding
  ENST00000481655 CTCFL-012 57518495-57525652 protein_coding
  ENST00000502686 CTCFL-022 57499554-57525107 protein_coding
  ENST00000539382 CTCFL-013 57506742-57525107 protein_coding
  ENST00000607923 CTCFL-010 57514592-57524867 retained_intron
  ENST00000608108 CTCFL-009 57514592-57525107 retained_intron
  ENST00000608158 CTCFL-011 57518495-57524867 protein_coding
  ENST00000608263 CTCFL-019 57497164-57524867 protein_coding
  ENST00000608425 CTCFL-014 57506742-57525652 protein_coding
  ENST00000608440 CTCFL-023 57499554-57524257 protein_coding
  ENST00000608720 CTCFL-007 57514592-57524867 nonsense_mediated_decay
  ENST00000608858 CTCFL-008 57514592-57525107 processed_transcript
  ENST00000608903 CTCFL-015 57506742-57525107 protein_coding
  ENST00000609232 CTCFL-004 57497164-57525652 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243914ENST00000371196ENST00000423479ENST00000426658ENST00000429804ENST00000502686ENST00000608108ENST00000608903
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243914 N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A 0.073±0.00 N/A 0.037±0.01 5.408±4.33
ENST00000371196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.02 N/A
ENST00000423479 0.081±0.00 0.055±0.00 0.081±0.00 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426658 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A
ENST00000429804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.164±0.00
ENST00000502686 N/A N/A 0.053±0.00 N/A 0.039±0.00 N/A 0.080±0.04 N/A N/A N/A N/A N/A
ENST00000608108 0.254±0.00 0.165±0.00 N/A 0.038±0.00 N/A 0.263±0.00 0.018±0.00 0.100±0.00 N/A 0.064±0.00 N/A N/A
ENST00000608903 0.098±0.00 0.061±0.00 0.106±0.00 N/A 0.030±0.00 N/A 0.014±0.00 N/A N/A 0.056±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_00030G CIL_00030G_0001 CGP 20:57391407-57525652
CIL_0005JC CIL_0005JC_0001 CGP 20:57495966-57568112

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006349 ISS regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0010628 IDA positive regulation of gene expression
GO:0016571 ISS histone methylation
GO:0042393 ISS histone binding
GO:0043046 ISS DNA methylation involved in gamete generation
GO:0043565 ISS sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051569 IMP regulation of histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000070495 Ctcfl CCCTC-binding factor (zinc finger protein)-like protein_coding Mus_musculus

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