C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCCTC-binding factor (zinc finger protein)-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000070495 Ctcfl 10090 - 2:173093609-173119525 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094287 Ctcfl-001 173093609-173119525 protein_coding
  ENSMUST00000179693 Ctcfl-201 173093609-173119525 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094287ENSMUST00000179693
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094287 N/A 0.162±0.00 0.348±0.20 0.276±0.00 0.045±0.00 N/A 0.129±0.11 N/A 0.085±0.05 0.248±0.17 0.220±0.19 0.419±0.14
ENSMUST00000179693 0.761±0.12 N/A 0.019±0.00 0.209±0.04 0.088±0.03 0.122±0.02 0.434±0.15 0.132±0.02 0.030±0.00 0.154±0.05 0.041±0.00 0.485±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_00030G CIL_00030G_0002 CGP 2:173020498-173119525
CIL_0005JC CIL_0005JC_0002 CGP 2:173093609-173159273

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006349 IDA regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0010628 IEA positive regulation of gene expression
GO:0016571 IDA histone methylation
GO:0042393 IDA histone binding
GO:0043046 IDA DNA methylation involved in gamete generation
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051569 IEA regulation of histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000124092 CTCFL CCCTC-binding factor (zinc finger protein)-like protein_coding Homo_sapiens

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