C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCCTC-binding factor (zinc finger protein)-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000502686 CTCFL-022 ENSG00000124092 9606 - 20:57499554-57525107 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverENST00000502686
Transcript ID Breast Heart Liver
ENST00000502686 0.053±0.00 0.039±0.00 0.080±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_00030G CIL_00030G_0001 CGP 20:57391407-57525652
CIL_0005JC CIL_0005JC_0001 CGP 20:57495966-57568112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006349 ISS regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0010628 IDA positive regulation of gene expression
GO:0016571 ISS histone methylation
GO:0042393 ISS histone binding
GO:0043046 ISS DNA methylation involved in gamete generation
GO:0043565 ISS sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051569 IMP regulation of histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000150745 si:ch211-162i8.7-001 protein_coding Danio_rerio 0.000003 58
ENSDART00000156654 si:dkey-9i5.4-201 protein_coding Danio_rerio 0.00004 55
ENSDART00000150312 si:dkey-9i5.4-001 protein_coding Danio_rerio 0.00004 55
ENSDART00000154478 si:dkey-5i16.5-002 protein_coding Danio_rerio 0.00004 55
ENSDART00000156494 si:ch211-235i11.6-001 protein_coding Danio_rerio 0.0001 53
ENSDART00000129056 BX321873.2-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000136337 CU457794.2-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000131950 ZNF585A (30 of 40)-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000127809 BX000701.1-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000150341 si:ch73-155e10.1-001 protein_coding Danio_rerio 0.0001 53
ENSDART00000156963 ZNF697-001 protein_coding Danio_rerio 0.0001 53
ENSDART00000126807 zgc:113100-206 protein_coding Danio_rerio 0.0001 53
ENSDART00000125028 ZNF585A (15 of 40)-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000151895 ZNF585A (15 of 40)-001 protein_coding Danio_rerio 0.0001 53
ENSDART00000113144 zgc:173575-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000099981 CU207245.1-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000143033 ZNF585A (33 of 40)-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000150249 ZNF585A (33 of 40)-001 protein_coding Danio_rerio 0.0001 53
ENSDART00000122069 BX571760.1-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000130935 CT737138.1-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000126738 CABZ01070854.1-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000130027 BX005085.3-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000140121 si:ch211-235i11.5-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000157095 si:ch211-235i11.5-001 protein_coding Danio_rerio 0.0001 53
ENSDART00000106573 BX005085.1-201 protein_coding Danio_rerio 0.0001 53
ENSDART00000125947 BX005085.3-201 protein_coding Danio_rerio 0.0001 53

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