C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00030G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132819-ENSG00000124092 CGP 9606 20:57391407-57525652
GeneTranscriptPositionBiotype
ENSG00000124092 (CTCFL)
CCCTC-binding factor (zinc finger protein)-like 		ENST00000243914 (CTCFL-001) 57497168-57525209 protein_coding
ENST00000371196 (CTCFL-003) 57497168-57525579 protein_coding
ENST00000422109 (CTCFL-018) 57499554-57524867 nonsense_mediated_decay
ENST00000422869 (CTCFL-016) 57506742-57525652 protein_coding
ENST00000423479 (CTCFL-020) 57495966-57525107 protein_coding
ENST00000426658 (CTCFL-017) 57499554-57524867 nonsense_mediated_decay
ENST00000429804 (CTCFL-005) 57497164-57525652 protein_coding
ENST00000432255 (CTCFL-006) 57506742-57524867 protein_coding
ENST00000433949 (CTCFL-021) 57499554-57525107 protein_coding
ENST00000481655 (CTCFL-012) 57518495-57525652 protein_coding
ENST00000502686 (CTCFL-022) 57499554-57525107 protein_coding
ENST00000539382 (CTCFL-013) 57506742-57525107 protein_coding
ENST00000607923 (CTCFL-010) 57514592-57524867 retained_intron
ENST00000608108 (CTCFL-009) 57514592-57525107 retained_intron
ENST00000608158 (CTCFL-011) 57518495-57524867 protein_coding
ENST00000608263 (CTCFL-019) 57497164-57524867 protein_coding
ENST00000608425 (CTCFL-014) 57506742-57525652 protein_coding
ENST00000608440 (CTCFL-023) 57499554-57524257 protein_coding
ENST00000608720 (CTCFL-007) 57514592-57524867 nonsense_mediated_decay
ENST00000608858 (CTCFL-008) 57514592-57525107 processed_transcript
ENST00000608903 (CTCFL-015) 57506742-57525107 protein_coding
ENST00000609232 (CTCFL-004) 57497164-57525652 protein_coding
ENSG00000124097 (HMGB1P1)
high mobility group box 1 pseudogene 1 		ENST00000522557 (HMGB1P1-001) 57488392-57489027 processed_pseudogene
ENSG00000132819 (RBM38)
RNA binding motif protein 38 		ENST00000342690 (RBM38-005) 57391453-57407776 nonsense_mediated_decay
ENST00000344785 (RBM38-003) 57391637-57409333 nonsense_mediated_decay
ENST00000356208 (RBM38-001) 57391407-57409333 protein_coding
ENST00000371219 (RBM38-002) 57392230-57407860 protein_coding
ENST00000440234 (RBM38-004) 57391428-57407713 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00030G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027510-ENSMUSG00000070495 CGP 10090 2:173020498-173119525
GeneTranscriptPositionBiotype
ENSMUSG00000027510 (Rbm38)
RNA binding motif protein 38 		ENSMUST00000029014 (Rbm38-201) 173021902-173034725 protein_coding
ENSMUST00000130430 (Rbm38-003) 173023050-173034700 retained_intron
ENSMUST00000155512 (Rbm38-002) 173021913-173034728 retained_intron
ENSMUST00000173393 (Rbm38-001) 173020498-173034734 protein_coding
ENSMUST00000173720 (Rbm38-008) 173022111-173033650 nonsense_mediated_decay
ENSMUST00000173878 (Rbm38-007) 173021899-173033913 nonsense_mediated_decay
ENSMUST00000173979 (Rbm38-005) 173022831-173034178 protein_coding
ENSMUST00000173997 (Rbm38-006) 173022438-173033709 protein_coding
ENSMUSG00000070495 (Ctcfl)
CCCTC-binding factor (zinc finger protein)-like 		ENSMUST00000094287 (Ctcfl-001) 173093609-173119525 protein_coding
ENSMUST00000179693 (Ctcfl-201) 173093609-173119525 protein_coding
ENSMUSG00000087382 (Ctcflos)
CCCTC-binding factor (zinc finger protein)-like, opposite strand 		ENSMUST00000142165 (Ctcflos-002) 173119738-173129310 antisense
ENSMUST00000142207 (Ctcflos-003) 173110835-173132270 antisense
ENSMUST00000144256 (Ctcflos-001) 173110818-173114709 antisense
ENSMUST00000153523 (Ctcflos-004) 173124749-173133204 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030G_0001ENSG00000124092ENST00000243914ENST00000371196ENST00000422109ENST00000422869ENST00000423479ENST00000426658ENST00000429804ENST00000432255ENST00000433949ENST00000481655ENST00000502686ENST00000539382ENST00000607923ENST00000608108ENST00000608158ENST00000608263ENST00000608425ENST00000608440ENST00000608720ENST00000608858ENST00000608903ENST00000609232ENSG00000124097ENST00000522557ENSG00000132819ENST00000342690ENST00000344785ENST00000356208ENST00000371219ENST00000440234CIL_00030G_0002ENSMUSG00000027510ENSMUST00000029014ENSMUST00000130430ENSMUST00000155512ENSMUST00000173393ENSMUST00000173720ENSMUST00000173878ENSMUST00000173979ENSMUST00000173997ENSMUSG00000070495ENSMUST00000094287ENSMUST00000179693ENSMUSG00000087382ENSMUST00000142165ENSMUST00000142207ENSMUST00000144256ENSMUST00000153523
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030G_0001ENSG00000124092ENST00000243914ENST00000371196ENST00000423479ENST00000426658ENST00000429804ENST00000502686ENST00000608108ENST00000608903ENSG00000124097ENST00000522557ENSG00000132819ENST00000342690ENST00000344785ENST00000356208ENST00000440234CIL_00030G_0002ENSMUSG00000027510ENSMUST00000029014ENSMUST00000130430ENSMUST00000155512ENSMUST00000173393ENSMUST00000173878ENSMUST00000173979ENSMUST00000173997ENSMUSG00000070495ENSMUST00000094287ENSMUST00000179693ENSMUSG00000087382ENSMUST00000142165ENSMUST00000142207ENSMUST00000144256ENSMUST00000153523
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124092 ENST00000243914 N/A N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A 0.073±0.00 N/A 0.037±0.01 5.408±4.33
ENST00000371196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.02 N/A
ENST00000422109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423479 0.081±0.00 N/A N/A 0.055±0.00 0.081±0.00 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A
ENST00000429804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.164±0.00
ENST00000432255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502686 N/A N/A N/A N/A 0.053±0.00 N/A 0.039±0.00 N/A 0.080±0.04 N/A N/A N/A N/A N/A
ENST00000539382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608108 0.254±0.00 N/A N/A 0.165±0.00 N/A 0.038±0.00 N/A 0.263±0.00 0.018±0.00 0.100±0.00 N/A 0.064±0.00 N/A N/A
ENST00000608158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608903 0.098±0.00 N/A N/A 0.061±0.00 0.106±0.00 N/A 0.030±0.00 N/A 0.014±0.00 N/A N/A 0.056±0.00 N/A N/A
ENST00000609232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000124097 ENST00000522557 0.020±0.00 0.178±0.00 N/A 0.176±0.00 0.138±0.08 0.344±0.00 0.082±0.00 0.112±0.00 0.111±0.07 N/A 0.020±0.00 0.335±0.20 0.123±0.00 0.136±0.10
ENSG00000132819 ENST00000342690 N/A N/A N/A N/A 0.900±0.00 1.172±0.00 1.468±0.00 N/A N/A N/A 7.245±0.00 N/A N/A N/A
ENST00000344785 N/A N/A N/A N/A N/A N/A N/A 0.526±0.00 N/A N/A N/A N/A 2.230±0.00 N/A
ENST00000356208 6.658±0.00 25.783±0.00 N/A 2.770±2.21 6.833±5.01 18.553±16.49 13.953±12.40 7.924±0.00 2.665±0.19 9.825±9.08 57.973±44.15 28.446±19.48 13.755±1.82 31.374±1.17
ENST00000371219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440234 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.491±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027510 ENSMUST00000029014 11.091±1.73 12.138±1.15 30.565±1.80 5.760±3.59 35.521±14.42 17.038±1.49 54.184±6.05 5.007±1.06 70.909±88.27 11.240±0.33 64.108±5.87 18.125±7.70 30.658±18.49 4.841±1.86
ENSMUST00000130430 N/A N/A N/A N/A 1.672±0.00 N/A N/A N/A N/A N/A N/A 2.243±1.20 N/A N/A
ENSMUST00000155512 N/A 3.669±0.54 N/A 0.125±0.00 12.203±0.74 N/A N/A N/A 16.109±0.00 N/A N/A 1.492±0.00 2.104±0.00 N/A
ENSMUST00000173393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.173±0.00
ENSMUST00000173720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173878 7.419±0.84 27.763±4.54 20.132±0.00 6.900±0.00 65.006±23.81 20.967±1.69 48.881±0.34 2.759±0.50 31.367±33.58 14.232±2.78 N/A 24.316±2.97 21.569±0.32 4.502±1.00
ENSMUST00000173979 11.472±1.62 N/A N/A 5.444±0.00 N/A N/A N/A N/A 96.029±0.00 7.175±0.00 N/A 35.834±6.72 N/A N/A
ENSMUST00000173997 N/A N/A N/A 12.512±0.00 76.753±43.56 N/A N/A N/A 44.429±79.58 N/A N/A 62.257±0.00 N/A N/A
ENSMUSG00000070495 ENSMUST00000094287 N/A N/A 0.162±0.00 0.348±0.20 N/A 0.276±0.00 0.045±0.00 N/A 0.129±0.11 N/A 0.085±0.05 0.248±0.17 0.220±0.19 0.419±0.14
ENSMUST00000179693 0.761±0.12 N/A N/A 0.019±0.00 N/A 0.209±0.04 0.088±0.03 0.122±0.02 0.434±0.15 0.132±0.02 0.030±0.00 0.154±0.05 0.041±0.00 0.485±0.01
ENSMUSG00000087382 ENSMUST00000142165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.737±0.00
ENSMUST00000142207 5.481±4.06 N/A N/A N/A N/A 0.389±0.00 N/A 0.285±0.07 N/A 0.302±0.00 0.267±0.06 0.666±0.20 N/A N/A
ENSMUST00000144256 1.184±0.00 N/A N/A N/A N/A 0.271±0.00 0.291±0.09 0.271±0.00 N/A N/A 0.097±0.00 0.392±0.10 N/A 0.617±0.00
ENSMUST00000153523 1.819±0.00 0.537±0.01 0.206±0.00 N/A 2.109±0.75 0.098±0.04 0.085±0.02 0.162±0.08 0.718±0.77 0.170±0.07 0.078±0.05 0.275±0.14 0.107±0.10 0.504±0.21

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