C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373233 CHD6-001 ENSG00000124177 9606 - 20:41402101-41618494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000373233
Transcript ID Adrenal Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000373233 0.570±0.00 3.258±0.00 3.016±1.15 1.377±0.00 1.191±0.00 2.238±1.26 0.628±0.13 1.120±0.00 1.970±1.44 1.805±0.30 4.316±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E8 CIL_0004E8_0001 CGP 20:41359966-41618494
CIL_0004E5 CIL_0004E5_0001 CGP 20:41402101-43189970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001221 IPI transcription cofactor binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005654 IDA nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0006200 IEA ATP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0008026 IEA ATP-dependent helicase activity
GO:0008094 IDA DNA-dependent ATPase activity
GO:0016568 IEA chromatin modification
GO:0016787 IEA hydrolase activity
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0036091 IMP positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039782 Chd6-003 protein_coding Mus_musculus 0 9786
ENSMUST00000134178 Chd6-001 protein_coding Mus_musculus 0 4730
ENSMUST00000138078 Chd6-005 retained_intron Mus_musculus 0 3664
ENSMUST00000125179 Chd6-002 retained_intron Mus_musculus 0 1062
ENSMUST00000137152 Chd6-011 processed_transcript Mus_musculus 0 835
ENSMUST00000143081 Chd6-007 processed_transcript Mus_musculus 0 815
ENSMUST00000137831 Chd6-009 processed_transcript Mus_musculus 0 780
ENSMUST00000130265 Chd6-004 protein_coding Mus_musculus 0 769
ENSMUST00000155918 Chd6-006 retained_intron Mus_musculus 0 512
ENSMUST00000149866 Chd6-010 retained_intron Mus_musculus 0 477
ENSMUST00000155066 Chd6-008 processed_transcript Mus_musculus 0 470
ENSDART00000155549 CHD6-001 protein_coding Danio_rerio 2e-19 104

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