C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124222 STX16 9606 + 20:58651253-58679526 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000312283 STX16-016 58651273-58671277 protein_coding
  ENST00000355957 STX16-004 58651272-58679526 protein_coding
  ENST00000358029 STX16-010 58651879-58679526 protein_coding
  ENST00000359617 STX16-018 58651283-58679500 protein_coding
  ENST00000361770 STX16-201 58652007-58676291 protein_coding
  ENST00000361830 STX16-202 58651253-58679524 protein_coding
  ENST00000371132 STX16-001 58651605-58679526 protein_coding
  ENST00000371141 STX16-002 58651283-58679526 protein_coding
  ENST00000412911 STX16-020 58651279-58669418 protein_coding
  ENST00000438253 STX16-021 58667520-58676486 protein_coding
  ENST00000458280 STX16-019 58651272-58669424 protein_coding
  ENST00000460655 STX16-017 58651283-58670547 nonsense_mediated_decay
  ENST00000464640 STX16-005 58652007-58673711 nonsense_mediated_decay
  ENST00000467096 STX16-003 58651866-58676328 nonsense_mediated_decay
  ENST00000468590 STX16-012 58652097-58671297 processed_transcript
  ENST00000476384 STX16-006 58651303-58676291 nonsense_mediated_decay
  ENST00000483434 STX16-007 58651304-58676348 nonsense_mediated_decay
  ENST00000490700 STX16-008 58651316-58676396 processed_transcript
  ENST00000493301 STX16-015 58652026-58671284 nonsense_mediated_decay
  ENST00000496003 STX16-014 58651746-58673711 processed_transcript
  ENST00000496117 STX16-009 58651313-58671219 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355957ENST00000358029ENST00000359617ENST00000361770ENST00000371132ENST00000371141ENST00000438253ENST00000464640ENST00000496003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355957 7.135±0.00 3.963±0.00 1.056±0.00 5.382±4.73 4.071±0.00 N/A 3.790±0.00 3.211±0.00 1.271±0.00 3.188±1.77 0.833±0.24 7.647±2.84 3.295±0.94 7.674±5.71
ENST00000358029 N/A N/A N/A N/A N/A N/A N/A N/A 1.341±0.00 N/A N/A N/A N/A N/A
ENST00000359617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.887±0.00 N/A
ENST00000361770 N/A N/A N/A 3.699±0.00 6.317±0.00 N/A N/A N/A 6.892±0.00 N/A N/A 6.019±0.00 N/A N/A
ENST00000371132 N/A N/A N/A 3.388±0.00 1.943±0.00 2.566±0.00 N/A N/A 1.213±0.00 2.427±0.20 1.887±0.00 4.009±1.69 2.575±0.00 1.748±0.00
ENST00000371141 N/A 4.203±0.00 1.891±0.00 0.917±0.00 3.096±0.70 2.980±1.23 1.083±0.00 2.146±1.70 N/A 4.764±0.00 N/A N/A 2.699±0.60 5.206±0.00
ENST00000438253 N/A N/A N/A N/A N/A 5.548±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464640 N/A N/A N/A N/A N/A N/A N/A 3.289±0.00 N/A N/A N/A N/A N/A N/A
ENST00000496003 N/A N/A N/A N/A N/A 5.364±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000697 CIL_000697_0002 CGP 20:58459101-58679526

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IDA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005730 IDA nucleolus
GO:0005737 TAS cytoplasm
GO:0005925 IDA focal adhesion
GO:0006886 IEA intracellular protein transport
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0031201 IEA SNARE complex
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003307 stx16 syntaxin 16 protein_coding Danio_rerio
ENSMUSG00000027522 Stx16 syntaxin 16 protein_coding Mus_musculus

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