C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355957 STX16-004 ENSG00000124222 9606 + 20:58651272-58679526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355957
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355957 7.135±0.00 3.963±0.00 1.056±0.00 5.382±4.73 4.071±0.00 3.790±0.00 3.211±0.00 1.271±0.00 3.188±1.77 0.833±0.24 7.647±2.84 3.295±0.94 7.674±5.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000697 CIL_000697_0002 CGP 20:58459101-58679526

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IDA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005730 IDA nucleolus
GO:0005737 TAS cytoplasm
GO:0005925 IDA focal adhesion
GO:0006886 IEA intracellular protein transport
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0031201 IEA:TAS SNARE complex
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044638 Stx16-201 protein_coding Mus_musculus 0 464
ENSMUST00000087908 Stx16-001 protein_coding Mus_musculus 0 464
ENSMUST00000156054 Stx16-005 protein_coding Mus_musculus 4e-28 132

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