C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UPF3 regulator of nonsense transcripts homolog B (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125351 UPF3B 9606 - X:119834022-119852998 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276201 UPF3B-001 119834022-119852998 protein_coding
  ENST00000345865 UPF3B-002 119834026-119852998 protein_coding
  ENST00000478840 UPF3B-003 119838266-119845254 processed_transcript
  ENST00000619445 UPF3B-201 119834482-119852971 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276201ENST00000345865ENST00000619445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276201 2.005±0.00 0.964±0.00 N/A 0.379±0.30 N/A N/A N/A N/A 0.088±0.00 0.429±0.00 0.146±0.00 2.494±3.07 0.943±0.67 1.346±0.00
ENST00000345865 2.749±0.00 4.132±0.00 0.164±0.00 4.412±0.00 1.783±1.59 5.124±0.00 1.700±0.00 3.793±0.00 2.236±0.00 3.153±0.00 2.730±0.00 2.695±1.26 1.835±1.25 10.178±3.24
ENST00000619445 N/A N/A 0.090±0.00 0.271±0.00 0.109±0.00 0.962±0.00 0.141±0.00 0.221±0.00 0.245±0.00 N/A N/A 0.168±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000175 CIL_000175_0002 CGP X:119786504-119852998

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 NAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003729 IDA mRNA binding
GO:0005487 NAS nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0031124 TAS mRNA 3'-end processing
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000489 upf3b UPF3 regulator of nonsense transcripts homolog B (yeast) protein_coding Danio_rerio
ENSMUSG00000036572 Upf3b UPF3 regulator of nonsense transcripts homolog B (yeast) protein_coding Mus_musculus

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