C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UPF3 regulator of nonsense transcripts homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345865 UPF3B-002 ENSG00000125351 9606 - X:119834026-119852998 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345865
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345865 2.749±0.00 4.132±0.00 0.164±0.00 4.412±0.00 1.783±1.59 5.124±0.00 1.700±0.00 3.793±0.00 2.236±0.00 3.153±0.00 2.730±0.00 2.695±1.26 1.835±1.25 10.178±3.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000175 CIL_000175_0002 CGP X:119786504-119852998

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 NAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003729 IDA mRNA binding
GO:0005487 NAS nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0031124 TAS mRNA 3'-end processing
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076265 Upf3b-001 protein_coding Mus_musculus 0 1971
ENSMUST00000133481 Upf3b-002 processed_transcript Mus_musculus 0 1038
ENSMUST00000130324 Upf3b-003 protein_coding Mus_musculus 0 599

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