C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UPF3 regulator of nonsense transcripts homolog B (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036572 Upf3b 10090 - X:37091678-37110322 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076265 Upf3b-001 37091678-37110322 protein_coding
  ENSMUST00000130324 Upf3b-003 37095676-37104523 protein_coding
  ENSMUST00000133481 Upf3b-002 37097450-37110322 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076265ENSMUST00000130324ENSMUST00000133481
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076265 0.537±0.08 0.986±0.32 5.608±0.09 13.618±5.87 1.522±0.34 1.357±0.57 1.218±0.19 1.056±0.61 5.713±3.56 2.012±0.36 3.943±0.87 4.935±6.46 6.448±4.11 7.408±10.22
ENSMUST00000130324 N/A N/A N/A 12.248±0.00 N/A N/A N/A N/A N/A N/A N/A 32.474±0.00 10.624±2.67 49.084±0.00
ENSMUST00000133481 1.267±0.63 1.081±0.31 N/A N/A 1.499±0.33 1.571±0.57 0.539±0.06 0.930±0.31 1.212±0.75 2.552±0.20 N/A 2.085±0.61 0.770±0.07 1.452±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000175 CIL_000175_0003 CGP X:37082520-37110322

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003729 IEA mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0035145 IEA exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:0045727 IEA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000489 upf3b UPF3 regulator of nonsense transcripts homolog B (yeast) protein_coding Danio_rerio
ENSG00000125351 UPF3B UPF3 regulator of nonsense transcripts homolog B (yeast) protein_coding Homo_sapiens

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