C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RanBP-type and C3HC4-type zinc finger containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125826 RBCK1 9606 + 20:407498-430966 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000353660 RBCK1-009 408171-430966 protein_coding
  ENST00000356286 RBCK1-010 408053-430966 protein_coding
  ENST00000382181 RBCK1-006 408313-430966 protein_coding
  ENST00000382214 RBCK1-005 408050-430966 nonsense_mediated_decay
  ENST00000400245 RBCK1-003 408305-410764 processed_transcript
  ENST00000400247 RBCK1-002 408343-410764 protein_coding
  ENST00000411647 RBCK1-004 407498-417822 protein_coding
  ENST00000414880 RBCK1-007 409884-419642 protein_coding
  ENST00000415942 RBCK1-011 408053-430966 nonsense_mediated_decay
  ENST00000441733 RBCK1-013 408147-417823 protein_coding
  ENST00000465226 RBCK1-012 407540-408751 processed_transcript
  ENST00000468272 RBCK1-008 422154-430966 retained_intron
  ENST00000475269 RBCK1-001 408078-410764 protein_coding
  ENST00000621487 RBCK1-014 421942-427488 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000353660ENST00000356286ENST00000382181ENST00000382214ENST00000400245ENST00000400247ENST00000415942ENST00000441733ENST00000468272ENST00000475269
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000353660 3.396±0.00 N/A N/A N/A N/A 0.735±0.00 1.366±0.00 N/A N/A 1.354±0.00 1.329±0.00 N/A N/A N/A
ENST00000356286 3.898±0.00 15.509±0.00 N/A 3.964±0.00 9.812±0.00 7.324±5.62 12.999±0.00 5.511±2.73 11.522±0.00 7.282±6.20 7.236±0.00 24.741±13.42 24.754±0.13 10.967±0.00
ENST00000382181 3.156±0.00 7.407±0.00 1.852±0.00 2.725±0.81 5.655±0.00 3.545±2.80 N/A 7.182±0.00 N/A 8.205±0.00 7.549±0.00 17.459±0.00 8.069±0.99 7.010±0.00
ENST00000382214 4.048±0.00 N/A N/A N/A 3.991±0.00 N/A N/A 4.088±0.00 1.396±0.00 7.540±0.00 N/A N/A 11.082±0.00 4.158±0.00
ENST00000400245 N/A N/A N/A 0.875±0.00 3.866±0.00 N/A N/A 1.522±0.00 N/A N/A 2.045±0.00 N/A N/A N/A
ENST00000400247 6.744±0.00 N/A N/A N/A N/A N/A N/A 3.482±0.00 N/A N/A N/A N/A N/A N/A
ENST00000415942 N/A N/A N/A 0.489±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441733 N/A N/A 2.102±0.00 1.016±0.00 3.797±0.00 N/A N/A N/A N/A 1.701±0.00 N/A N/A N/A N/A
ENST00000468272 N/A 9.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475269 N/A N/A 0.684±0.00 N/A 8.909±0.00 6.764±4.67 N/A 8.464±0.00 16.104±15.36 N/A 9.621±0.00 25.414±17.54 13.195±1.18 12.114±2.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0001 VISTA 20:23407-624368

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0016874 IEA ligase activity
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0042346 IEA positive regulation of NF-kappaB import into nucleus
GO:0043065 IEA positive regulation of apoptotic process
GO:0043123 IDA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 IDA ubiquitin binding
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050852 IDA T cell receptor signaling pathway
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity
GO:0060546 IEA negative regulation of necroptotic process
GO:0071797 IDA LUBAC complex
GO:0097039 IDA protein linear polyubiquitination
GO:2001238 IEA positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000027466 Rbck1 RanBP-type and C3HC4-type zinc finger containing 1 protein_coding Mus_musculus

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