C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adaptor-related protein complex 5, sigma 1 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125843 AP5S1 9606 + 20:3820524-3828837 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000246041 AP5S1-201 3820524-3825307 protein_coding
  ENST00000379567 AP5S1-004 3820536-3825302 protein_coding
  ENST00000379573 AP5S1-003 3820531-3825302 protein_coding
  ENST00000455742 AP5S1-002 3820547-3823954 protein_coding
  ENST00000615891 AP5S1-001 3820556-3828837 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000246041ENST00000379567ENST00000379573ENST00000455742ENST00000615891
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000246041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.592±0.00 N/A N/A N/A
ENST00000379567 N/A 1.839±0.00 0.129±0.00 1.819±0.06 2.851±2.03 N/A 0.928±0.38 2.123±1.61 3.316±0.00 1.282±0.58 2.276±0.00 3.081±0.59 4.136±0.75 4.263±0.54
ENST00000379573 1.815±0.00 3.971±0.00 N/A 1.296±0.00 N/A 1.290±0.00 2.816±0.00 3.132±0.00 2.125±0.00 N/A 0.860±0.00 2.083±0.95 4.574±1.56 1.577±0.47
ENST00000455742 1.515±0.00 N/A N/A N/A N/A 0.817±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615891 0.310±0.00 0.741±0.00 0.018±0.00 0.401±0.00 0.475±0.00 0.125±0.00 0.333±0.00 0.530±0.34 N/A 0.141±0.00 0.241±0.00 0.718±0.47 0.337±0.00 0.631±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034Y CIL_00034Y_0001 CGP 20:3786772-3828837
CIL_00034V CIL_00034V_0001 CGP 20:3820524-3876123

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IEA:IMP double-strand break repair via homologous recombination
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005764 IDA lysosome
GO:0005770 IDA late endosome
GO:0015031 IEA protein transport
GO:0016197 IEA:IMP endosomal transport
GO:0030119 IEA:IDA AP-type membrane coat adaptor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076755 ap5s1 adaptor-related protein complex 5, sigma 1 subunit protein_coding Danio_rerio
ENSMUSG00000068264 Ap5s1 adaptor-related protein 5 complex, sigma 1 subunit protein_coding Mus_musculus

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