C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 5, sigma 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000615891 AP5S1-001 ENSG00000125843 9606 + 20:3820556-3828837 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000615891
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000615891 0.310±0.00 0.741±0.00 0.018±0.00 0.401±0.00 0.475±0.00 0.125±0.00 0.333±0.00 0.530±0.34 0.141±0.00 0.241±0.00 0.718±0.47 0.337±0.00 0.631±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034Y CIL_00034Y_0001 CGP 20:3786772-3828837
CIL_00034V CIL_00034V_0001 CGP 20:3820524-3876123

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IEA:IMP double-strand break repair via homologous recombination
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005764 IDA lysosome
GO:0005770 IDA late endosome
GO:0015031 IEA protein transport
GO:0016197 IEA:IMP endosomal transport
GO:0030119 IEA:IDA AP-type membrane coat adaptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110208 Ap5s1-003 protein_coding Mus_musculus 0 612
ENSMUST00000110206 Ap5s1-005 protein_coding Mus_musculus 0 575
ENSMUST00000089506 Ap5s1-001 protein_coding Mus_musculus 0 440
ENSMUST00000110210 Ap5s1-002 protein_coding Mus_musculus 0 440
ENSMUST00000134086 Ap5s1-004 processed_transcript Mus_musculus 0 412
ENSMUST00000153097 Ap5s1-007 protein_coding Mus_musculus 0 239

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