C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 5, sigma 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379567 AP5S1-004 ENSG00000125843 9606 + 20:3820536-3825302 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379567
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379567 1.839±0.00 0.129±0.00 1.819±0.06 2.851±2.03 0.928±0.38 2.123±1.61 3.316±0.00 1.282±0.58 2.276±0.00 3.081±0.59 4.136±0.75 4.263±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034Y CIL_00034Y_0001 CGP 20:3786772-3828837
CIL_00034V CIL_00034V_0001 CGP 20:3820524-3876123

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IEA:IMP double-strand break repair via homologous recombination
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005764 IDA lysosome
GO:0005770 IDA late endosome
GO:0015031 IEA protein transport
GO:0016197 IEA:IMP endosomal transport
GO:0030119 IEA:IDA AP-type membrane coat adaptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110208 Ap5s1-003 protein_coding Mus_musculus 0 616
ENSMUST00000110206 Ap5s1-005 protein_coding Mus_musculus 0 579
ENSMUST00000089506 Ap5s1-001 protein_coding Mus_musculus 0 444
ENSMUST00000110210 Ap5s1-002 protein_coding Mus_musculus 0 444
ENSMUST00000134086 Ap5s1-004 processed_transcript Mus_musculus 0 412
ENSMUST00000153097 Ap5s1-007 protein_coding Mus_musculus 0 239

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