C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: N-terminal EF-hand calcium binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125967 NECAB3 9606 - 20:33657087-33674463 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000246190 NECAB3-010 33657087-33674408 protein_coding
  ENST00000375238 NECAB3-003 33657087-33674463 protein_coding
  ENST00000439478 NECAB3-016 33658523-33674409 protein_coding
  ENST00000463246 NECAB3-013 33657945-33662184 processed_transcript
  ENST00000473892 NECAB3-005 33669143-33670765 protein_coding
  ENST00000477778 NECAB3-002 33657087-33659547 processed_transcript
  ENST00000478237 NECAB3-015 33657730-33662237 processed_transcript
  ENST00000480994 NECAB3-006 33657962-33666659 protein_coding
  ENST00000483813 NECAB3-007 33657564-33662419 processed_transcript
  ENST00000484824 NECAB3-011 33669448-33674420 retained_intron
  ENST00000485399 NECAB3-009 33657637-33674389 nonsense_mediated_decay
  ENST00000485976 NECAB3-014 33657677-33663719 processed_transcript
  ENST00000488489 NECAB3-004 33657088-33674420 nonsense_mediated_decay
  ENST00000493590 NECAB3-012 33659885-33674366 nonsense_mediated_decay
  ENST00000494174 NECAB3-001 33657757-33669428 processed_transcript
  ENST00000498353 NECAB3-008 33659659-33662423 processed_transcript
  ENST00000606106 NECAB3-022 33659927-33666702 processed_transcript
  ENST00000606525 NECAB3-018 33657088-33662778 processed_transcript
  ENST00000606690 NECAB3-020 33658480-33674359 protein_coding
  ENST00000606699 NECAB3-017 33660251-33674420 retained_intron
  ENST00000607055 NECAB3-021 33672034-33674388 retained_intron
  ENST00000607805 NECAB3-019 33658527-33674408 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000246190ENST00000375238ENST00000477778ENST00000478237ENST00000485399ENST00000485976ENST00000488489ENST00000493590ENST00000494174ENST00000606525ENST00000606690ENST00000606699ENST00000607055
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000246190 N/A 0.955±0.00 N/A 5.243±0.00 2.287±0.00 2.307±0.00 3.418±2.57 2.619±0.00 1.513±0.00 N/A 4.984±0.00 5.195±3.45 2.247±0.74 5.468±0.00
ENST00000375238 N/A N/A N/A 4.725±0.01 1.489±1.07 N/A 5.593±3.89 2.185±0.00 2.761±0.00 6.010±0.00 22.308±0.00 5.193±0.23 4.175±1.85 N/A
ENST00000477778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.032±0.00 N/A N/A N/A
ENST00000478237 3.795±0.00 N/A N/A N/A 6.488±0.00 N/A N/A N/A N/A N/A N/A N/A 2.246±0.00 N/A
ENST00000485399 N/A N/A N/A N/A 1.048±0.00 N/A N/A N/A N/A N/A 2.530±0.00 4.923±0.00 2.111±0.00 N/A
ENST00000485976 N/A N/A N/A N/A N/A N/A N/A 0.915±0.00 N/A N/A N/A N/A N/A N/A
ENST00000488489 N/A N/A N/A 1.936±0.00 N/A 1.101±0.00 N/A N/A 0.660±0.30 1.764±0.13 1.213±0.00 5.176±4.28 N/A N/A
ENST00000493590 N/A N/A 1.831±0.00 N/A N/A N/A 2.248±0.00 N/A N/A 2.680±0.00 N/A N/A N/A N/A
ENST00000494174 N/A 3.343±0.00 N/A 6.333±0.00 N/A N/A N/A N/A N/A N/A N/A 7.614±0.00 N/A N/A
ENST00000606525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.953±0.00
ENST00000606690 N/A N/A 1.144±0.00 N/A N/A N/A N/A 2.286±0.00 N/A N/A 4.543±0.00 2.630±0.00 N/A N/A
ENST00000606699 N/A N/A N/A N/A N/A N/A N/A N/A 1.057±0.00 N/A N/A 1.318±0.00 N/A N/A
ENST00000607055 N/A N/A N/A N/A N/A 4.656±0.00 N/A N/A N/A 2.490±0.00 N/A 1.446±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051Z CIL_00051Z_0001 CGP 20:33490075-33674463
CIL_000520 CIL_000520_0001 CGP 20:33657087-33674463

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000137 IDA Golgi cis cisterna
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0009306 NAS protein secretion
GO:0019538 IDA protein metabolic process
GO:0042984 IDA regulation of amyloid precursor protein biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074794 NECAB3 N-terminal EF-hand calcium binding protein 3 protein_coding Danio_rerio
ENSMUSG00000027489 Necab3 N-terminal EF-hand calcium binding protein 3 protein_coding Mus_musculus

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