C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: N-terminal EF-hand calcium binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027489 Necab3 10090 - 2:154544399-154558890 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000895 Necab3-001 154544399-154558866 protein_coding
  ENSMUST00000109716 Necab3-002 154544399-154558851 protein_coding
  ENSMUST00000124382 Necab3-005 154547141-154558844 processed_transcript
  ENSMUST00000125793 Necab3-003 154547046-154558890 protein_coding
  ENSMUST00000130824 Necab3-007 154545045-154546794 retained_intron
  ENSMUST00000135530 Necab3-004 154554290-154558852 retained_intron
  ENSMUST00000149725 Necab3-006 154554668-154557279 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000895ENSMUST00000109716ENSMUST00000124382ENSMUST00000125793ENSMUST00000130824ENSMUST00000135530ENSMUST00000149725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000895 1.008±0.50 0.951±0.09 0.164±0.05 5.804±2.74 0.731±0.37 0.144±0.08 0.219±0.10 0.248±0.05 0.370±0.24 0.414±0.12 0.119±0.00 0.693±0.45 0.203±0.07 25.363±0.00
ENSMUST00000109716 0.352±0.00 N/A N/A 5.389±0.00 N/A 0.074±0.00 0.140±0.12 N/A 0.040±0.00 0.298±0.06 0.147±0.08 0.617±0.11 0.129±0.09 N/A
ENSMUST00000124382 N/A N/A N/A N/A N/A N/A N/A 0.344±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000125793 N/A N/A N/A 28.454±0.00 N/A N/A N/A N/A N/A N/A 0.156±0.01 N/A N/A N/A
ENSMUST00000130824 2.008±0.00 1.387±0.12 N/A 3.859±0.00 1.270±0.15 0.232±0.11 0.165±0.02 0.322±0.02 0.682±0.56 0.715±0.00 0.111±0.04 2.286±0.91 0.486±0.13 N/A
ENSMUST00000135530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A N/A N/A
ENSMUST00000149725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.01 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051Z CIL_00051Z_0002 CGP 2:154436481-154558890
CIL_000520 CIL_000520_0002 CGP 2:154544399-154558890

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000137 ISS Golgi cis cisterna
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0019538 ISS protein metabolic process
GO:0042984 IEA regulation of amyloid precursor protein biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074794 NECAB3 N-terminal EF-hand calcium binding protein 3 protein_coding Danio_rerio
ENSG00000125967 NECAB3 N-terminal EF-hand calcium binding protein 3 protein_coding Homo_sapiens

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