C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000520_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125967-ENSG00000125967 CGP 9606 20:33657087-33674463
GeneTranscriptPositionBiotype
ENSG00000125967 (NECAB3)
N-terminal EF-hand calcium binding protein 3 		ENST00000246190 (NECAB3-010) 33657087-33674408 protein_coding
ENST00000375238 (NECAB3-003) 33657087-33674463 protein_coding
ENST00000439478 (NECAB3-016) 33658523-33674409 protein_coding
ENST00000463246 (NECAB3-013) 33657945-33662184 processed_transcript
ENST00000473892 (NECAB3-005) 33669143-33670765 protein_coding
ENST00000477778 (NECAB3-002) 33657087-33659547 processed_transcript
ENST00000478237 (NECAB3-015) 33657730-33662237 processed_transcript
ENST00000480994 (NECAB3-006) 33657962-33666659 protein_coding
ENST00000483813 (NECAB3-007) 33657564-33662419 processed_transcript
ENST00000484824 (NECAB3-011) 33669448-33674420 retained_intron
ENST00000485399 (NECAB3-009) 33657637-33674389 nonsense_mediated_decay
ENST00000485976 (NECAB3-014) 33657677-33663719 processed_transcript
ENST00000488489 (NECAB3-004) 33657088-33674420 nonsense_mediated_decay
ENST00000493590 (NECAB3-012) 33659885-33674366 nonsense_mediated_decay
ENST00000494174 (NECAB3-001) 33657757-33669428 processed_transcript
ENST00000498353 (NECAB3-008) 33659659-33662423 processed_transcript
ENST00000606106 (NECAB3-022) 33659927-33666702 processed_transcript
ENST00000606525 (NECAB3-018) 33657088-33662778 processed_transcript
ENST00000606690 (NECAB3-020) 33658480-33674359 protein_coding
ENST00000606699 (NECAB3-017) 33660251-33674420 retained_intron
ENST00000607055 (NECAB3-021) 33672034-33674388 retained_intron
ENST00000607805 (NECAB3-019) 33658527-33674408 nonsense_mediated_decay
ENSG00000149609 (C20orf144)
chromosome 20 open reading frame 144 		ENST00000375222 (C20orf144-001) 33662284-33663914 protein_coding
ENST00000607738 (C20orf144-002) 33663366-33665619 retained_intron
ENSG00000182584 (ACTL10)
actin-like 10 		ENST00000330271 (ACTL10-001) 33666498-33668525 protein_coding
CIL_000520_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027489-ENSMUSG00000027489 CGP 10090 2:154544399-154558890
GeneTranscriptPositionBiotype
ENSMUSG00000027489 (Necab3)
N-terminal EF-hand calcium binding protein 3 		ENSMUST00000000895 (Necab3-001) 154544399-154558866 protein_coding
ENSMUST00000109716 (Necab3-002) 154544399-154558851 protein_coding
ENSMUST00000124382 (Necab3-005) 154547141-154558844 processed_transcript
ENSMUST00000125793 (Necab3-003) 154547046-154558890 protein_coding
ENSMUST00000130824 (Necab3-007) 154545045-154546794 retained_intron
ENSMUST00000135530 (Necab3-004) 154554290-154558852 retained_intron
ENSMUST00000149725 (Necab3-006) 154554668-154557279 retained_intron
ENSMUSG00000038523 (1700003F12Rik)
RIKEN cDNA 1700003F12 gene 		ENSMUST00000045116 (1700003F12Rik-001) 154548888-154550003 protein_coding
ENSMUST00000109709 (1700003F12Rik-002) 154548927-154550003 protein_coding
ENSMUST00000135641 (1700003F12Rik-003) 154547085-154549818 retained_intron
ENSMUSG00000078129 (Actl10)
actin-like 10 		ENSMUST00000104928 (Actl10-001) 154551776-154553276 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000520_0001ENSG00000125967ENST00000246190ENST00000375238ENST00000439478ENST00000463246ENST00000473892ENST00000477778ENST00000478237ENST00000480994ENST00000483813ENST00000484824ENST00000485399ENST00000485976ENST00000488489ENST00000493590ENST00000494174ENST00000498353ENST00000606106ENST00000606525ENST00000606690ENST00000606699ENST00000607055ENST00000607805ENSG00000149609ENST00000375222ENST00000607738ENSG00000182584ENST00000330271CIL_000520_0002ENSMUSG00000027489ENSMUST00000000895ENSMUST00000109716ENSMUST00000124382ENSMUST00000125793ENSMUST00000130824ENSMUST00000135530ENSMUST00000149725ENSMUSG00000038523ENSMUST00000045116ENSMUST00000109709ENSMUST00000135641ENSMUSG00000078129ENSMUST00000104928
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000520_0001ENSG00000125967ENST00000246190ENST00000375238ENST00000477778ENST00000478237ENST00000485399ENST00000485976ENST00000488489ENST00000493590ENST00000494174ENST00000606525ENST00000606690ENST00000606699ENST00000607055ENSG00000149609ENST00000375222ENST00000607738ENSG00000182584ENST00000330271CIL_000520_0002ENSMUSG00000027489ENSMUST00000000895ENSMUST00000109716ENSMUST00000124382ENSMUST00000125793ENSMUST00000130824ENSMUST00000135530ENSMUST00000149725ENSMUSG00000038523ENSMUST00000045116ENSMUST00000109709ENSMUST00000135641ENSMUSG00000078129ENSMUST00000104928
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125967 ENST00000246190 N/A 0.955±0.00 N/A 5.243±0.00 2.287±0.00 2.307±0.00 3.418±2.57 2.619±0.00 1.513±0.00 N/A 4.984±0.00 5.195±3.45 2.247±0.74 5.468±0.00
ENST00000375238 N/A N/A N/A 4.725±0.01 1.489±1.07 N/A 5.593±3.89 2.185±0.00 2.761±0.00 6.010±0.00 22.308±0.00 5.193±0.23 4.175±1.85 N/A
ENST00000439478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.032±0.00 N/A N/A N/A
ENST00000478237 3.795±0.00 N/A N/A N/A 6.488±0.00 N/A N/A N/A N/A N/A N/A N/A 2.246±0.00 N/A
ENST00000480994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485399 N/A N/A N/A N/A 1.048±0.00 N/A N/A N/A N/A N/A 2.530±0.00 4.923±0.00 2.111±0.00 N/A
ENST00000485976 N/A N/A N/A N/A N/A N/A N/A 0.915±0.00 N/A N/A N/A N/A N/A N/A
ENST00000488489 N/A N/A N/A 1.936±0.00 N/A 1.101±0.00 N/A N/A 0.660±0.30 1.764±0.13 1.213±0.00 5.176±4.28 N/A N/A
ENST00000493590 N/A N/A 1.831±0.00 N/A N/A N/A 2.248±0.00 N/A N/A 2.680±0.00 N/A N/A N/A N/A
ENST00000494174 N/A 3.343±0.00 N/A 6.333±0.00 N/A N/A N/A N/A N/A N/A N/A 7.614±0.00 N/A N/A
ENST00000498353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.953±0.00
ENST00000606690 N/A N/A 1.144±0.00 N/A N/A N/A N/A 2.286±0.00 N/A N/A 4.543±0.00 2.630±0.00 N/A N/A
ENST00000606699 N/A N/A N/A N/A N/A N/A N/A N/A 1.057±0.00 N/A N/A 1.318±0.00 N/A N/A
ENST00000607055 N/A N/A N/A N/A N/A 4.656±0.00 N/A N/A N/A 2.490±0.00 N/A 1.446±0.00 N/A N/A
ENST00000607805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000149609 ENST00000375222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 65.159±17.60
ENST00000607738 N/A N/A 0.341±0.00 N/A 0.279±0.00 N/A N/A N/A 0.488±0.00 N/A N/A N/A N/A N/A
ENSG00000182584 ENST00000330271 N/A 1.703±0.00 N/A N/A 0.353±0.00 N/A N/A N/A N/A N/A N/A 3.217±0.00 N/A 33.228±13.96
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027489 ENSMUST00000000895 1.008±0.50 0.951±0.09 0.164±0.05 5.804±2.74 0.731±0.37 0.144±0.08 0.219±0.10 0.248±0.05 0.370±0.24 0.414±0.12 0.119±0.00 0.693±0.45 0.203±0.07 25.363±0.00
ENSMUST00000109716 0.352±0.00 N/A N/A 5.389±0.00 N/A 0.074±0.00 0.140±0.12 N/A 0.040±0.00 0.298±0.06 0.147±0.08 0.617±0.11 0.129±0.09 N/A
ENSMUST00000124382 N/A N/A N/A N/A N/A N/A N/A 0.344±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000125793 N/A N/A N/A 28.454±0.00 N/A N/A N/A N/A N/A N/A 0.156±0.01 N/A N/A N/A
ENSMUST00000130824 2.008±0.00 1.387±0.12 N/A 3.859±0.00 1.270±0.15 0.232±0.11 0.165±0.02 0.322±0.02 0.682±0.56 0.715±0.00 0.111±0.04 2.286±0.91 0.486±0.13 N/A
ENSMUST00000135530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A N/A N/A
ENSMUST00000149725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.01 N/A N/A N/A
ENSMUSG00000038523 ENSMUST00000045116 0.785±0.10 0.790±0.08 0.282±0.00 N/A 1.551±0.46 0.254±0.13 0.301±0.13 0.305±0.03 1.435±1.61 0.728±0.15 N/A 0.776±0.00 0.137±0.06 586.132±254.84
ENSMUST00000109709 N/A 0.959±0.15 N/A N/A N/A 0.152±0.02 0.243±0.00 0.272±0.00 0.033±0.00 N/A 0.134±0.00 0.809±0.24 0.075±0.00 16.693±0.00
ENSMUST00000135641 N/A 0.570±0.01 N/A N/A N/A 0.158±0.08 N/A N/A 0.166±0.10 N/A N/A N/A 0.069±0.00 9.778±0.00
ENSMUSG00000078129 ENSMUST00000104928 0.239±0.06 0.253±0.15 0.038±0.00 0.557±0.21 0.226±0.10 0.048±0.02 0.071±0.02 0.036±0.02 0.140±0.04 0.166±0.06 0.059±0.00 0.292±0.19 0.021±0.00 18.061±4.24

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