C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-terminal EF-hand calcium binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000246190 NECAB3-010 ENSG00000125967 9606 - 20:33657087-33674408 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000246190
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000246190 0.955±0.00 5.243±0.00 2.287±0.00 2.307±0.00 3.418±2.57 2.619±0.00 1.513±0.00 4.984±0.00 5.195±3.45 2.247±0.74 5.468±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051Z CIL_00051Z_0001 CGP 20:33490075-33674463
CIL_000520 CIL_000520_0001 CGP 20:33657087-33674463

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000137 IDA Golgi cis cisterna
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0009306 NAS protein secretion
GO:0019538 IDA protein metabolic process
GO:0042984 IDA regulation of amyloid precursor protein biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130824 Necab3-007 retained_intron Mus_musculus 0 431
ENSMUST00000000895 Necab3-001 protein_coding Mus_musculus 0 429
ENSMUST00000109716 Necab3-002 protein_coding Mus_musculus 0 374

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