C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calpain, small subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001794 Capns1 10090 - 7:30186942-30195164 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001845 Capns1-001 30186942-30195164 protein_coding
  ENSMUST00000108196 Capns1-002 30186990-30193106 protein_coding
  ENSMUST00000126116 Capns1-004 30190049-30194150 protein_coding
  ENSMUST00000129761 Capns1-005 30187483-30193781 processed_transcript
  ENSMUST00000141851 Capns1-006 30187507-30192410 processed_transcript
  ENSMUST00000146852 Capns1-003 30193546-30195036 retained_intron
  ENSMUST00000148973 Capns1-007 30187168-30190226 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001845ENSMUST00000108196ENSMUST00000126116ENSMUST00000129761ENSMUST00000141851ENSMUST00000148973
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001845 138.583±16.26 215.627±28.46 64.364±14.03 35.360±3.85 101.784±22.96 95.016±13.16 101.918±4.10 83.030±13.61 37.847±14.36 106.733±6.46 10.989±0.00 85.816±25.44 72.914±12.85 36.661±7.55
ENSMUST00000108196 167.796±31.26 227.132±79.21 38.984±0.00 30.747±10.75 283.601±39.45 215.573±94.38 95.302±23.70 65.842±32.08 41.302±16.60 162.579±26.90 32.352±4.12 166.764±58.34 110.276±90.69 93.403±42.13
ENSMUST00000126116 N/A N/A N/A 54.043±0.00 N/A N/A N/A N/A N/A N/A N/A 117.540±0.00 180.281±75.89 N/A
ENSMUST00000129761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.064±0.00
ENSMUST00000141851 N/A N/A N/A 97.694±0.00 N/A N/A N/A N/A N/A N/A N/A 222.121±0.00 162.864±56.24 124.916±0.00
ENSMUST00000148973 N/A 242.533±0.31 N/A 33.859±3.08 N/A N/A N/A N/A 26.960±1.85 N/A N/A 93.104±0.00 58.491±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004198 IMP calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005737 IBA cytoplasm
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0006508 IBA proteolysis
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013804 capns1b calpain, small subunit 1 b protein_coding Danio_rerio
ENSDARG00000035329 capns1a calpain, small subunit 1 a protein_coding Danio_rerio
ENSG00000126247 CAPNS1 calpain, small subunit 1 protein_coding Homo_sapiens

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