C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear RNA export factor 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000126952 NXF5 9606 - X:101832112-101857577 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263032 NXF5-001 101832112-101857577 nonsense_mediated_decay
  ENST00000332614 NXF5-005 101832112-101857577 nonsense_mediated_decay
  ENST00000361330 NXF5-004 101832112-101857577 nonsense_mediated_decay
  ENST00000372803 NXF5-002 101832112-101857577 nonsense_mediated_decay
  ENST00000473265 NXF5-007 101832198-101843199 protein_coding
  ENST00000493509 NXF5-003 101832112-101857577 nonsense_mediated_decay
  ENST00000537026 NXF5-201 101832112-101843307 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyLiverLungTestisENST00000332614ENST00000361330ENST00000473265ENST00000493509
Transcript ID Adrenal Brain Heart Kidney Liver Lung Testis
ENST00000332614 N/A 0.030±0.00 N/A N/A N/A N/A N/A
ENST00000361330 N/A N/A 0.007±0.00 0.069±0.00 N/A N/A 0.031±0.00
ENST00000473265 N/A N/A N/A N/A 0.066±0.00 0.019±0.00 0.038±0.00
ENST00000493509 0.057±0.00 N/A N/A N/A N/A N/A 0.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037P CIL_00037P_0001 CGP X:101655281-101857577
CIL_00037S CIL_00037S_0001 CGP X:101832112-101932031

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IDA:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0006406 IDA:IEA mRNA export from nucleus
GO:0007275 IEP multicellular organismal development
GO:0050658 IDA RNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055076 nxf1 nuclear RNA export factor 1 protein_coding Danio_rerio
ENSDARG00000086017 NXF1 (2 of 4) protein_coding Danio_rerio
ENSDARG00000089034 NXF1 (3 of 4) protein_coding Danio_rerio
ENSDARG00000095404 NXF1 (4 of 4) protein_coding Danio_rerio
ENSMUSG00000009941 Nxf2 nuclear RNA export factor 2 protein_coding Mus_musculus
ENSMUSG00000031410 Nxf7 nuclear RNA export factor 7 protein_coding Mus_musculus

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