C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear RNA export factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009941 Nxf2 10090 - X:134944526-134964754 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000010085 Nxf2-003 134944528-134964754 protein_coding
  ENSMUST00000113187 Nxf2-002 134944528-134963896 protein_coding
  ENSMUST00000113189 Nxf2-001 134944528-134964754 protein_coding
  ENSMUST00000143059 Nxf2-004 134944526-134956350 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010085ENSMUST00000113187ENSMUST00000113189ENSMUST00000143059
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010085 N/A N/A 0.029±0.00 N/A N/A N/A 0.020±0.00 0.012±0.01 N/A N/A 0.138±0.00 N/A 1.539±0.63
ENSMUST00000113187 0.046±0.03 0.042±0.00 0.048±0.02 N/A N/A 0.032±0.00 N/A 0.038±0.01 N/A 0.011±0.00 0.374±0.21 0.063±0.01 7.452±0.00
ENSMUST00000113189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 1.218±0.54
ENSMUST00000143059 0.098±0.02 N/A N/A 0.079±0.03 0.053±0.00 0.040±0.00 N/A 0.064±0.05 0.038±0.01 0.026±0.00 0.210±0.11 0.095±0.07 1.890±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037P CIL_00037P_0002 CGP X:134804145-134964754
CIL_00037S CIL_00037S_0002 CGP X:134944526-135009209

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IEA cytoplasm
GO:0006405 IDA RNA export from nucleus
GO:0016973 IPI poly(A)+ mRNA export from nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055076 nxf1 nuclear RNA export factor 1 protein_coding Danio_rerio
ENSDARG00000086017 NXF1 (2 of 4) protein_coding Danio_rerio
ENSDARG00000089034 NXF1 (3 of 4) protein_coding Danio_rerio
ENSDARG00000095404 NXF1 (4 of 4) protein_coding Danio_rerio
ENSG00000126952 NXF5 nuclear RNA export factor 5 protein_coding Homo_sapiens
ENSG00000269405 NXF2 nuclear RNA export factor 2 protein_coding Homo_sapiens
ENSG00000269437 NXF2B nuclear RNA export factor 2B protein_coding Homo_sapiens

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