C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 3-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435064 CPSF3L-001 ENSG00000127054 9606 - 1:1311597-1324691 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000435064
Transcript ID Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000435064 3.662±0.00 16.429±0.00 14.376±0.00 9.141±0.00 14.423±0.00 17.787±13.82 32.968±20.40 23.981±11.42 44.122±17.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059X CIL_00059X_0002 CGP 1:1292376-1311677
CIL_0001ML CIL_0001ML_0002 CGP 1:1311585-1328897

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0016180 IDA snRNA processing
GO:0016787 IEA hydrolase activity
GO:0032039 IDA integrator complex
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030901 Cpsf3l-001 protein_coding Mus_musculus 0 2047
ENSMUST00000120794 Cpsf3l-004 protein_coding Mus_musculus 0 1432
ENSMUST00000134678 Cpsf3l-005 processed_transcript Mus_musculus 0 861
ENSMUST00000156460 Cpsf3l-003 nonsense_mediated_decay Mus_musculus 0 737

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