C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 3-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450926 CPSF3L-023 ENSG00000127054 9606 - 1:1311819-1324670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLungMuscleTestisENST00000450926
Transcript ID Adipose Adrenal Brain Breast Lung Muscle Testis
ENST00000450926 42.664±0.00 37.676±0.00 16.674±0.00 27.494±0.00 3.787±0.00 21.064±0.00 34.857±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059X CIL_00059X_0002 CGP 1:1292376-1311677
CIL_0001ML CIL_0001ML_0002 CGP 1:1311585-1328897

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0016180 IDA snRNA processing
GO:0016787 IEA hydrolase activity
GO:0032039 IDA integrator complex
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120794 Cpsf3l-004 protein_coding Mus_musculus 0 1941
ENSMUST00000030901 Cpsf3l-001 protein_coding Mus_musculus 0 1434
ENSMUST00000134678 Cpsf3l-005 processed_transcript Mus_musculus 0 861
ENSMUST00000156460 Cpsf3l-003 nonsense_mediated_decay Mus_musculus 0 464

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