C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SIN3 transcription regulator family member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127511 SIN3B 9606 + 19:16829400-16880353 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248054 SIN3B-001 16829400-16880350 protein_coding
  ENST00000379803 SIN3B-003 16829407-16880353 protein_coding
  ENST00000594235 SIN3B-005 16877162-16878942 processed_transcript
  ENST00000594372 SIN3B-008 16865122-16869623 retained_intron
  ENST00000595049 SIN3B-010 16875931-16878706 retained_intron
  ENST00000595541 SIN3B-004 16863274-16878961 protein_coding
  ENST00000595900 SIN3B-012 16869882-16872666 processed_transcript
  ENST00000596638 SIN3B-006 16841952-16863286 protein_coding
  ENST00000596802 SIN3B-002 16829407-16855745 protein_coding
  ENST00000599880 SIN3B-007 16863097-16865590 processed_transcript
  ENST00000601141 SIN3B-011 16876939-16879060 retained_intron
  ENST00000602204 SIN3B-009 16869969-16871638 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248054ENST00000379803ENST00000594372ENST00000595049ENST00000595541ENST00000596802
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248054 10.011±0.00 7.209±0.00 1.184±0.00 5.042±4.20 4.713±0.00 8.743±0.00 2.171±1.90 3.328±2.90 1.164±0.00 7.808±6.36 3.850±0.00 13.689±5.61 12.606±1.00 20.049±3.50
ENST00000379803 N/A N/A N/A 4.613±0.00 N/A N/A N/A N/A 0.348±0.00 N/A 1.538±0.93 N/A 2.794±0.00 N/A
ENST00000594372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.277±0.00 N/A N/A N/A
ENST00000595049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.098±0.00 19.185±0.00 33.398±0.00
ENST00000595541 N/A N/A 0.780±0.00 N/A 1.077±0.00 N/A 0.666±0.00 0.656±0.00 N/A N/A N/A 3.188±0.00 5.702±0.00 11.050±0.00
ENST00000596802 N/A N/A N/A N/A N/A N/A 2.109±0.00 1.255±0.65 0.860±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006G2 CIL_0006G2_0001 CGP 19:16719976-16880353
CIL_0006GJ CIL_0006GJ_0001 CGP 19:16829400-16892606

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000805 IEA X chromosome
GO:0000806 IEA Y chromosome
GO:0001741 IEA XY body
GO:0003682 IEA chromatin binding
GO:0003714 IEA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007519 IEA skeletal muscle tissue development
GO:0030849 IEA autosome
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0048738 IEA cardiac muscle tissue development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062472 sin3b SIN3 homolog B, transcription regulator (yeast) protein_coding Danio_rerio
ENSMUSG00000031622 Sin3b transcriptional regulator, SIN3B (yeast) protein_coding Mus_musculus

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