C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcriptional regulator, SIN3B (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031622 Sin3b 10090 + 8:72723288-72758203 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004494 Sin3b-201 72723288-72758203 protein_coding
  ENSMUST00000109950 Sin3b-202 72723288-72739910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004494ENSMUST00000109950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004494 10.007±1.78 17.143±0.55 10.675±0.49 22.327±6.75 8.258±2.79 10.674±2.40 4.122±0.85 7.715±0.64 3.617±0.74 11.878±1.53 2.439±0.24 20.637±8.28 43.166±26.64 8.847±0.33
ENSMUST00000109950 51.785±17.41 109.187±23.49 40.429±6.56 44.778±4.28 48.453±2.62 30.141±12.80 29.834±4.26 52.571±3.70 34.965±10.83 20.161±8.86 11.556±1.00 73.591±21.57 758.729±379.11 163.133±36.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006G2 CIL_0006G2_0002 CGP 8:72646711-72758203
CIL_0006GJ CIL_0006GJ_0002 CGP 8:72723288-72763874

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000805 IDA X chromosome
GO:0000806 IDA Y chromosome
GO:0001741 IDA XY body
GO:0003682 IDA chromatin binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007519 IDA skeletal muscle tissue development
GO:0030849 IDA autosome
GO:0045786 TAS negative regulation of cell cycle
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048738 IDA cardiac muscle tissue development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062472 sin3b SIN3 homolog B, transcription regulator (yeast) protein_coding Danio_rerio
ENSG00000127511 SIN3B SIN3 transcription regulator family member B protein_coding Homo_sapiens

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