C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SIN3 transcription regulator family member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379803 SIN3B-003 ENSG00000127511 9606 + 19:16829407-16880353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMusclePlacentaENST00000379803
Transcript ID Brain Liver Muscle Placenta
ENST00000379803 4.613±0.00 0.348±0.00 1.538±0.93 2.794±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006G2 CIL_0006G2_0001 CGP 19:16719976-16880353
CIL_0006GJ CIL_0006GJ_0001 CGP 19:16829400-16892606

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000805 IEA X chromosome
GO:0000806 IEA Y chromosome
GO:0001741 IEA XY body
GO:0003682 IEA chromatin binding
GO:0003714 IEA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007519 IEA skeletal muscle tissue development
GO:0030849 IEA autosome
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0048738 IEA cardiac muscle tissue development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004494 Sin3b-201 protein_coding Mus_musculus 0 1327
ENSMUST00000109950 Sin3b-202 protein_coding Mus_musculus 0 817

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