C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptogyrin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127561 SYNGR3 9606 + 16:1989660-1994275 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248121 SYNGR3-001 1989945-1994275 protein_coding
  ENST00000562045 SYNGR3-005 1991124-1993374 protein_coding
  ENST00000563869 SYNGR3-003 1989660-1993169 protein_coding
  ENST00000564642 SYNGR3-006 1992463-1993298 retained_intron
  ENST00000568896 SYNGR3-004 1990157-1992711 protein_coding
  ENST00000618464 SYNGR3-201 1989999-1994267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248121ENST00000562045ENST00000563869ENST00000564642ENST00000568896ENST00000618464
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248121 N/A N/A 11.470±0.00 N/A 1.426±0.00 N/A 0.336±0.00 N/A N/A N/A 0.213±0.06 1.124±0.78 0.648±0.00
ENST00000562045 N/A N/A N/A 0.074±0.05 0.164±0.00 N/A N/A 0.036±0.02 0.216±0.00 N/A 0.052±0.00 N/A N/A
ENST00000563869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A
ENST00000564642 0.191±0.00 0.124±0.00 N/A N/A N/A 0.462±0.00 N/A N/A N/A 0.249±0.00 N/A N/A N/A
ENST00000568896 N/A N/A N/A N/A 0.987±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618464 0.135±0.00 N/A 8.659±4.47 0.042±0.00 1.181±0.00 N/A 0.779±0.47 0.034±0.00 0.766±0.00 0.034±0.00 0.440±0.00 2.805±2.24 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029B CIL_00029B_0002 CGP 16:1984207-1994275
CIL_00029C CIL_00029C_0002 CGP 16:1989660-2009823

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008021 ISS synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0021762 IEP substantia nigra development
GO:0030054 IEA cell junction
GO:0031594 IEA neuromuscular junction
GO:0032411 ISS positive regulation of transporter activity
GO:0042169 IEA SH2 domain binding
GO:0045202 IEA synapse
GO:0047485 IEA protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014871 syngr3a synaptogyrin 3a protein_coding Danio_rerio
ENSDARG00000025034 syngr3b synaptogyrin 3b protein_coding Danio_rerio
ENSMUSG00000007021 Syngr3 synaptogyrin 3 protein_coding Mus_musculus

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