C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DGCR8 microprocessor complex subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128191 DGCR8 9606 + 22:20080232-20111877 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000351989 DGCR8-001 20080232-20111871 protein_coding
  ENST00000383024 DGCR8-201 20080232-20111875 protein_coding
  ENST00000407755 DGCR8-003 20085822-20111872 protein_coding
  ENST00000457069 DGCR8-009 20080569-20086339 protein_coding
  ENST00000475941 DGCR8-008 20107572-20111261 retained_intron
  ENST00000485802 DGCR8-006 20106567-20109184 retained_intron
  ENST00000491892 DGCR8-007 20094712-20107036 retained_intron
  ENST00000495351 DGCR8-005 20106182-20107575 retained_intron
  ENST00000495826 DGCR8-002 20085820-20111872 retained_intron
  ENST00000498171 DGCR8-004 20087036-20111877 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351989ENST00000407755ENST00000495826ENST00000498171
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351989 N/A 9.543±0.00 0.937±0.00 1.586±0.00 6.084±0.00 2.869±1.46 1.383±0.00 4.232±2.78 N/A N/A 2.345±0.00 10.057±0.76 10.831±1.97 8.732±0.00
ENST00000407755 3.159±0.00 N/A N/A N/A N/A N/A 1.259±0.00 N/A 2.912±0.00 N/A 0.895±0.00 N/A N/A 12.335±0.00
ENST00000495826 N/A N/A 1.006±0.00 N/A N/A 1.709±0.00 N/A N/A N/A 1.032±0.00 N/A N/A N/A N/A
ENST00000498171 N/A N/A N/A N/A N/A N/A 1.007±0.44 N/A N/A N/A 0.475±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0001 VISTA 22:19497462-20100487
CIL_0003KS CIL_0003KS_0002 CGP 22:20080232-20117392

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003725 IDA double-stranded RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0010467 TAS gene expression
GO:0015630 IDA microtubule cytoskeleton
GO:0031053 IDA primary miRNA processing
GO:0046872 IEA metal ion binding
GO:0072091 IEA regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035564 dgcr8 DiGeorge syndrome critical region gene 8 protein_coding Danio_rerio
ENSMUSG00000022718 Dgcr8 DiGeorge syndrome critical region gene 8 protein_coding Mus_musculus

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