C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DGCR8 microprocessor complex subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407755 DGCR8-003 ENSG00000128191 9606 + 22:20085822-20111872 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartLiverMuscleTestisENST00000407755
Transcript ID Adipose Heart Liver Muscle Testis
ENST00000407755 3.159±0.00 1.259±0.00 2.912±0.00 0.895±0.00 12.335±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0001 VISTA 22:19497462-20100487
CIL_0003KS CIL_0003KS_0002 CGP 22:20080232-20117392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 IDA double-stranded RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0010467 TAS gene expression
GO:0015630 IDA microtubule cytoskeleton
GO:0031053 IDA primary miRNA processing
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183411 DGCR8-003 retained_intron Mus_musculus 0 2266
ENSMUST00000185053 DGCR8-002 protein_coding Mus_musculus 0 2266
ENSMUST00000184916 DGCR8-001 protein_coding Mus_musculus 0 2266
ENSMUST00000128856 Dgcr8-003 retained_intron Mus_musculus 0 2266
ENSMUST00000115633 Dgcr8-002 protein_coding Mus_musculus 0 2266
ENSMUST00000009321 Dgcr8-001 protein_coding Mus_musculus 0 2266
ENSMUST00000184628 DGCR8-005 processed_transcript Mus_musculus 0 684
ENSMUST00000152033 Dgcr8-005 processed_transcript Mus_musculus 0 684
ENSMUST00000185133 DGCR8-004 retained_intron Mus_musculus 0 429
ENSMUST00000156274 Dgcr8-004 retained_intron Mus_musculus 0 429
ENSDART00000051554 dgcr8-201 protein_coding Danio_rerio 6e-21 108
ENSDART00000124915 dgcr8-202 protein_coding Danio_rerio 6e-21 108
ENSDART00000144560 dgcr8-001 protein_coding Danio_rerio 6e-21 108

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