C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sperm antigen with calponin homology and coiled-coil domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128487 SPECC1 9606 + 17:20009344-20319026 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261503 SPECC1-018 20087022-20314755 protein_coding
  ENST00000395522 SPECC1-003 20156083-20237610 protein_coding
  ENST00000395525 SPECC1-026 20156089-20237179 protein_coding
  ENST00000395527 SPECC1-027 20009363-20314138 protein_coding
  ENST00000395529 SPECC1-002 20087021-20239427 protein_coding
  ENST00000395530 SPECC1-004 20155989-20319026 protein_coding
  ENST00000413167 SPECC1-007 20073565-20204465 processed_transcript
  ENST00000467722 SPECC1-008 20155994-20232405 nonsense_mediated_decay
  ENST00000472876 SPECC1-006 20009344-20236904 processed_transcript
  ENST00000492188 SPECC1-005 20305652-20314734 retained_intron
  ENST00000578153 SPECC1-021 20297034-20306173 protein_coding
  ENST00000578321 SPECC1-014 20009863-20096708 protein_coding
  ENST00000579688 SPECC1-010 20155742-20204657 processed_transcript
  ENST00000580934 SPECC1-017 20095693-20110500 protein_coding
  ENST00000581399 SPECC1-001 20205536-20314710 protein_coding
  ENST00000581973 SPECC1-016 20095692-20204356 protein_coding
  ENST00000582063 SPECC1-012 20155338-20204738 processed_transcript
  ENST00000582226 SPECC1-029 20205740-20237176 protein_coding
  ENST00000582604 SPECC1-015 20017145-20096715 protein_coding
  ENST00000583463 SPECC1-020 20009379-20204447 protein_coding
  ENST00000583482 SPECC1-025 20009364-20204352 protein_coding
  ENST00000583528 SPECC1-024 20009366-20110513 protein_coding
  ENST00000584527 SPECC1-028 20205796-20237148 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261503ENST00000395522ENST00000395525ENST00000395527ENST00000395529ENST00000395530ENST00000581399ENST00000583528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261503 1.226±0.00 N/A N/A 4.868±0.00 N/A 1.244±0.00 0.809±0.00 0.744±0.00 N/A 2.081±0.00 0.376±0.00 2.453±1.50 1.162±0.44 N/A
ENST00000395522 N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 1.196±0.00 N/A N/A N/A N/A
ENST00000395525 N/A N/A 6.478±0.00 18.827±0.00 10.847±0.00 6.229±0.00 2.615±0.00 0.491±0.00 8.532±0.00 1.270±0.00 1.026±0.00 N/A 1.720±0.00 15.142±0.00
ENST00000395527 2.014±0.00 N/A N/A 5.997±0.00 N/A N/A 0.621±0.00 N/A 0.076±0.00 N/A N/A N/A 0.677±0.00 N/A
ENST00000395529 0.941±0.00 1.287±0.00 0.756±0.00 2.932±0.00 1.742±0.00 N/A N/A 0.556±0.00 N/A N/A N/A 1.462±1.04 0.549±0.14 N/A
ENST00000395530 0.655±0.00 N/A N/A 4.076±2.34 1.439±0.00 0.795±0.17 0.391±0.09 0.599±0.00 0.030±0.00 0.575±0.00 0.256±0.00 1.963±1.57 N/A 3.791±0.00
ENST00000581399 N/A N/A N/A 10.565±0.00 N/A 2.355±0.00 N/A 1.954±0.00 0.087±0.00 1.357±0.00 N/A 4.444±1.67 2.177±1.01 13.962±3.46
ENST00000583528 N/A N/A N/A N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073H CIL_00073H_0001 CGP 17:19904302-20319026

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0007155 IDA cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029480 specc1 sperm antigen with calponin homology and coiled-coil domains 1 protein_coding Danio_rerio
ENSMUSG00000042331 Specc1 sperm antigen with calponin homology and coiled-coil domains 1 protein_coding Mus_musculus

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