C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128710 HOXD10 9606 + 2:176108790-176119942 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249501 HOXD10-001 176116579-176119942 protein_coding
  ENST00000490088 HOXD10-002 176108790-176119394 processed_transcript
  ENST00000549469 HOXD10-003 176108877-176119243 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000249501ENST00000490088ENST00000549469
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000249501 0.301±0.00 0.979±0.00 2.790±0.00 1.649±1.53 0.889±0.19 2.062±2.03 0.555±0.00 0.033±0.00 0.628±0.37 0.325±0.17 1.875±0.57
ENST00000490088 N/A N/A N/A N/A 1.061±0.00 0.036±0.00 N/A N/A N/A 0.086±0.00 N/A
ENST00000549469 N/A N/A 2.852±0.00 0.197±0.00 N/A N/A N/A 0.082±0.00 0.915±0.00 0.209±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_0001HF CIL_0001HF_0001 CGP 2:176099730-176109754
CIL_00017N CIL_00017N_0001 CGP 2:176104216-176119942
CIL_00017O CIL_00017O_0001 CGP 2:176108790-176124937

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007338 IEA single fertilization
GO:0007519 IEA skeletal muscle tissue development
GO:0008344 IEA adult locomotory behavior
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0010468 IEA regulation of gene expression
GO:0021520 IEA spinal cord motor neuron cell fate specification
GO:0030326 IEA embryonic limb morphogenesis
GO:0035136 IEA forelimb morphogenesis
GO:0035137 IEA hindlimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048935 IEA peripheral nervous system neuron development
GO:0050905 IEA neuromuscular process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057859 hoxd10a homeo box D10a protein_coding Danio_rerio
ENSMUSG00000050368 Hoxd10 homeobox D10 protein_coding Mus_musculus

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