C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000249501 HOXD10-001 ENSG00000128710 9606 + 2:176116579-176119942 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000249501
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000249501 0.301±0.00 0.979±0.00 2.790±0.00 1.649±1.53 0.889±0.19 2.062±2.03 0.555±0.00 0.033±0.00 0.628±0.37 0.325±0.17 1.875±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_0001HF CIL_0001HF_0001 CGP 2:176099730-176109754
CIL_00017N CIL_00017N_0001 CGP 2:176104216-176119942
CIL_00017O CIL_00017O_0001 CGP 2:176108790-176124937

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007338 IEA single fertilization
GO:0007519 IEA skeletal muscle tissue development
GO:0008344 IEA adult locomotory behavior
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0010468 IEA regulation of gene expression
GO:0021520 IEA spinal cord motor neuron cell fate specification
GO:0030326 IEA embryonic limb morphogenesis
GO:0035136 IEA forelimb morphogenesis
GO:0035137 IEA hindlimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048935 IEA peripheral nervous system neuron development
GO:0050905 IEA neuromuscular process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061745 Hoxd10-001 protein_coding Mus_musculus 0 2525
ENSDART00000130837 hoxd10a-201 protein_coding Danio_rerio 0 233
ENSDART00000080608 hoxd10a-001 protein_coding Danio_rerio 0 233
ENSDART00000110682 hoxb1a-001 protein_coding Danio_rerio 0.0000000001 73

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