C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rhomboid 5 homolog 2 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129667 RHBDF2 9606 - 17:76470891-76501790 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313080 RHBDF2-001 76470896-76501407 protein_coding
  ENST00000585701 RHBDF2-016 76481383-76493154 protein_coding
  ENST00000585989 RHBDF2-010 76479212-76501421 protein_coding
  ENST00000587640 RHBDF2-005 76475923-76481527 retained_intron
  ENST00000589526 RHBDF2-013 76479736-76493202 protein_coding
  ENST00000589582 RHBDF2-004 76474204-76481547 retained_intron
  ENST00000590168 RHBDF2-006 76470891-76477731 retained_intron
  ENST00000590288 RHBDF2-008 76481446-76501371 protein_coding
  ENST00000590322 RHBDF2-015 76481439-76488178 protein_coding
  ENST00000591192 RHBDF2-014 76481384-76493154 protein_coding
  ENST00000591255 RHBDF2-011 76481485-76501415 protein_coding
  ENST00000591697 RHBDF2-009 76479783-76501423 protein_coding
  ENST00000591860 RHBDF2-020 76471814-76473075 protein_coding
  ENST00000591879 RHBDF2-017 76479786-76481894 protein_coding
  ENST00000591885 RHBDF2-002 76471069-76501790 protein_coding
  ENST00000592123 RHBDF2-012 76479082-76501412 protein_coding
  ENST00000592378 RHBDF2-019 76479146-76501384 processed_transcript
  ENST00000593103 RHBDF2-018 76487411-76501415 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313080ENST00000585701ENST00000585989ENST00000587640ENST00000589526ENST00000589582ENST00000590168ENST00000590288ENST00000590322ENST00000591879ENST00000591885ENST00000592378ENST00000593103
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313080 11.448±0.00 N/A 1.455±0.00 1.111±0.00 1.808±0.00 1.615±0.00 0.672±0.00 7.302±0.00 N/A 1.330±0.00 1.629±0.00 0.550±0.23
ENST00000585701 N/A 1.009±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585989 N/A N/A 0.517±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587640 N/A N/A N/A N/A N/A N/A N/A 0.400±0.00 N/A N/A N/A 0.513±0.00
ENST00000589526 N/A N/A N/A N/A N/A 2.311±0.00 N/A N/A N/A N/A N/A N/A
ENST00000589582 N/A N/A N/A N/A N/A N/A N/A N/A 2.268±0.00 N/A N/A N/A
ENST00000590168 11.861±0.00 0.380±0.00 1.511±0.86 1.258±0.39 2.153±0.00 1.265±1.10 0.638±0.29 2.991±1.91 0.248±0.00 4.311±3.54 2.326±0.00 1.185±0.03
ENST00000590288 N/A N/A 0.640±0.00 N/A 0.793±0.00 N/A N/A 2.343±0.00 N/A N/A N/A N/A
ENST00000590322 N/A N/A N/A 2.294±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591879 N/A N/A N/A N/A N/A 1.028±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591885 N/A N/A 0.847±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592378 N/A N/A N/A N/A N/A N/A 1.248±0.00 N/A N/A N/A N/A N/A
ENST00000593103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.963±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EV CIL_0007EV_0001 CGP 17:76453351-76501790
CIL_0000CA CIL_0000CA_0001 CGP 17:76470891-76551175

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0005789 ISS endoplasmic reticulum membrane
GO:0005886 IDA plasma membrane
GO:0006508 IEA proteolysis
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0019838 IEA growth factor binding
GO:0050709 ISS negative regulation of protein secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000020806 Rhbdf2 rhomboid 5 homolog 2 (Drosophila) protein_coding Mus_musculus

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