C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: core-binding factor, runt domain, alpha subunit 2; translocated to, 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129993 CBFA2T3 9606 - 16:88874858-88977204 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268679 CBFA2T3-001 88874858-88977204 protein_coding
  ENST00000327483 CBFA2T3-002 88874858-88941198 protein_coding
  ENST00000562719 CBFA2T3-008 88892285-88902515 protein_coding
  ENST00000563640 CBFA2T3-009 88892399-88977080 protein_coding
  ENST00000563856 CBFA2T3-004 88875525-88881157 retained_intron
  ENST00000563920 CBFA2T3-005 88876228-88880036 retained_intron
  ENST00000564416 CBFA2T3-011 88898088-88941200 protein_coding
  ENST00000566868 CBFA2T3-007 88879430-88881313 nonsense_mediated_decay
  ENST00000569443 CBFA2T3-010 88892244-88941844 protein_coding
  ENST00000569464 CBFA2T3-006 88881112-88941809 protein_coding
  ENST00000570046 CBFA2T3-012 88901558-88957775 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268679ENST00000327483ENST00000562719ENST00000563640ENST00000563856ENST00000563920ENST00000564416ENST00000569464
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268679 N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000327483 1.029±0.00 7.192±0.00 N/A 0.090±0.00 N/A 2.903±0.00 1.015±0.92 N/A N/A 3.734±0.00 0.621±0.00 0.483±0.00 N/A 2.387±0.51
ENST00000562719 N/A N/A N/A N/A N/A N/A N/A N/A 0.346±0.00 N/A N/A N/A N/A N/A
ENST00000563640 N/A N/A N/A N/A N/A N/A N/A N/A 0.986±0.00 N/A N/A N/A N/A N/A
ENST00000563856 1.665±0.00 5.016±0.00 0.078±0.00 1.028±0.00 0.880±0.13 1.607±0.00 1.552±0.00 0.322±0.09 1.396±0.00 0.849±0.58 1.923±0.00 1.061±0.79 1.491±0.79 2.282±0.91
ENST00000563920 N/A N/A N/A 0.388±0.00 0.646±0.00 0.529±0.00 N/A N/A 0.158±0.00 1.039±0.00 0.417±0.00 0.413±0.00 1.976±0.00 3.442±0.00
ENST00000564416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.107±0.00 N/A N/A
ENST00000569464 N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A 1.761±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_0006AK CIL_0006AK_0002 CGP 16:88863333-88977204
CIL_0006AJ CIL_0006AJ_0002 CGP 16:88874858-89155846

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008283 TAS cell proliferation
GO:0016020 IEA membrane
GO:0030851 IDA granulocyte differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079012 CBFA2T3 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 protein_coding Danio_rerio
ENSMUSG00000006362 Cbfa2t3 core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) protein_coding Mus_musculus

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