C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: core-binding factor, runt domain, alpha subunit 2; translocated to, 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000327483 CBFA2T3-002 ENSG00000129993 9606 - 16:88874858-88941198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLungMuscleOvaryTestisENST00000327483
Transcript ID Adipose Adrenal Brain Colon Heart Lung Muscle Ovary Testis
ENST00000327483 1.029±0.00 7.192±0.00 0.090±0.00 2.903±0.00 1.015±0.92 3.734±0.00 0.621±0.00 0.483±0.00 2.387±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_0006AK CIL_0006AK_0002 CGP 16:88863333-88977204
CIL_0006AJ CIL_0006AJ_0002 CGP 16:88874858-89155846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008283 TAS cell proliferation
GO:0016020 IEA membrane
GO:0030851 IDA granulocyte differentiation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006525 Cbfa2t3-003 protein_coding Mus_musculus 0 1635
ENSMUST00000064674 Cbfa2t3-002 protein_coding Mus_musculus 0 1450
ENSMUST00000127984 Cbfa2t3-001 protein_coding Mus_musculus 0 1450
ENSMUST00000105566 Runx1t1-201 protein_coding Mus_musculus 0 586
ENSMUST00000098256 Runx1t1-004 protein_coding Mus_musculus 0 586
ENSMUST00000098257 Runx1t1-003 protein_coding Mus_musculus 0 586
ENSMUST00000006761 Runx1t1-001 protein_coding Mus_musculus 0 586
ENSMUST00000134045 Cbfa2t3-005 protein_coding Mus_musculus 0 401
ENSMUST00000142535 Cbfa2t3-007 processed_transcript Mus_musculus 0 398
ENSMUST00000147374 Cbfa2t3-006 processed_transcript Mus_musculus 0 353
ENSMUST00000148630 Cbfa2t3-004 retained_intron Mus_musculus 5e-38 161

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