C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calponin 1, basic, smooth muscle
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130176 CNN1 9606 + 19:11538717-11550323 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252456 CNN1-001 11538717-11550323 protein_coding
  ENST00000535659 CNN1-003 11538775-11550000 protein_coding
  ENST00000585869 CNN1-005 11540236-11541173 protein_coding
  ENST00000586059 CNN1-004 11539894-11547906 protein_coding
  ENST00000586577 CNN1-008 11546708-11549724 protein_coding
  ENST00000587087 CNN1-009 11541190-11549959 protein_coding
  ENST00000588468 CNN1-006 11538853-11542241 processed_transcript
  ENST00000588935 CNN1-007 11547840-11550321 protein_coding
  ENST00000592338 CNN1-010 11546675-11549758 protein_coding
  ENST00000592923 CNN1-002 11538767-11550322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252456ENST00000535659ENST00000586059ENST00000586577ENST00000588935ENST00000592338ENST00000592923
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252456 27.182±0.00 150.912±0.00 1.796±0.00 1.302±0.99 36.398±2.42 207.665±163.27 20.307±18.26 8.751±8.15 94.567±94.27 74.896±70.94 2.502±1.87 74.975±76.28 27.639±19.94 51.601±42.78
ENST00000535659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.217±0.00
ENST00000586059 N/A N/A N/A 2.380±1.31 28.433±0.00 31.258±0.00 31.945±0.00 0.772±0.00 92.980±0.00 N/A 1.054±0.00 N/A N/A 15.554±0.00
ENST00000586577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.317±0.00 14.258±0.00
ENST00000588935 22.844±0.00 168.374±0.00 N/A 5.598±0.00 42.453±0.00 574.903±0.00 N/A N/A 0.696±0.00 N/A N/A N/A N/A 175.786±0.00
ENST00000592338 N/A N/A N/A 0.575±0.00 N/A N/A 2.027±0.00 N/A N/A N/A 7.322±0.00 4.335±0.00 5.083±0.00 N/A
ENST00000592923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.733±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000767 CIL_000767_0001 CGP 19:11505916-11550323
CIL_00076D CIL_00076D_0001 CGP 19:11538717-11559236

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005856 IDA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006940 TAS regulation of smooth muscle contraction
GO:0031032 IEA actomyosin structure organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017193 cnn1a calponin 1, basic, smooth muscle, a protein_coding Danio_rerio
ENSMUSG00000001349 Cnn1 calponin 1 protein_coding Mus_musculus

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