C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calponin 1, basic, smooth muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252456 CNN1-001 ENSG00000130176 9606 + 19:11538717-11550323 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252456 27.182±0.00 150.912±0.00 1.796±0.00 1.302±0.99 36.398±2.42 207.665±163.27 20.307±18.26 8.751±8.15 94.567±94.27 74.896±70.94 2.502±1.87 74.975±76.28 27.639±19.94 51.601±42.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000767 CIL_000767_0001 CGP 19:11505916-11550323
CIL_00076D CIL_00076D_0001 CGP 19:11538717-11559236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005856 IDA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006940 TAS regulation of smooth muscle contraction
GO:0031032 IEA actomyosin structure organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001384 Cnn1-201 protein_coding Mus_musculus 0 1356
ENSDART00000133772 cnn1b-001 protein_coding Danio_rerio 0 370
ENSDART00000141018 cnn1b-201 protein_coding Danio_rerio 0 351

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