C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calponin 1, basic, smooth muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588935 CNN1-007 ENSG00000130176 9606 + 19:11547840-11550321 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverTestisENST00000588935
Transcript ID Adipose Adrenal Brain Breast Colon Liver Testis
ENST00000588935 22.844±0.00 168.374±0.00 5.598±0.00 42.453±0.00 574.903±0.00 0.696±0.00 175.786±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000767 CIL_000767_0001 CGP 19:11505916-11550323
CIL_00076D CIL_00076D_0001 CGP 19:11538717-11559236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001384 Cnn1-201 protein_coding Mus_musculus 0 520
ENSDART00000141018 cnn1b-201 protein_coding Danio_rerio 0 241
ENSDART00000133772 cnn1b-001 protein_coding Danio_rerio 0 241

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