C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type V, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130635 COL5A1 9606 + 9:134641774-134844843 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371817 COL5A1-001 134641774-134844843 protein_coding
  ENST00000371820 COL5A1-003 134824644-134835204 protein_coding
  ENST00000460264 COL5A1-002 134822922-134830353 retained_intron
  ENST00000463925 COL5A1-009 134808961-134810457 processed_transcript
  ENST00000464187 COL5A1-004 134653185-134709227 processed_transcript
  ENST00000465877 COL5A1-007 134824722-134832876 retained_intron
  ENST00000469093 COL5A1-008 134731593-134732669 processed_transcript
  ENST00000618395 COL5A1-201 134641805-134844840 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371817ENST00000371820ENST00000460264ENST00000618395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371817 5.551±0.00 9.747±0.00 0.269±0.00 N/A 16.544±9.55 5.544±2.12 1.633±1.20 4.799±0.00 3.035±2.33 2.949±2.46 0.403±0.00 23.342±17.23 76.962±10.15 6.440±4.70
ENST00000371820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.237±0.00
ENST00000460264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 226.347±0.00 N/A
ENST00000618395 N/A N/A N/A 0.154±0.07 N/A 0.955±0.00 N/A N/A 1.030±0.17 N/A 1.012±0.00 0.835±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000152 CIL_000152_0001 CGP 9:134317098-134844843
CIL_0001EU CIL_0001EU_0001 CGP 9:134641774-134887520

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0003007 IEA heart morphogenesis
GO:0005178 NAS integrin binding
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005588 IMP collagen type V trimer
GO:0005604 IEA basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IMP cell adhesion
GO:0007411 TAS axon guidance
GO:0008201 IDA heparin binding
GO:0016477 IMP cell migration
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030199 IMP collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IMP extracellular matrix
GO:0032964 IMP collagen biosynthetic process
GO:0035313 IMP wound healing, spreading of epidermal cells
GO:0035989 IEA tendon development
GO:0043206 IMP extracellular fibril organization
GO:0043394 IPI proteoglycan binding
GO:0043588 IMP skin development
GO:0045112 IMP integrin biosynthetic process
GO:0046872 IEA metal ion binding
GO:0048407 IDA platelet-derived growth factor binding
GO:0048592 IMP eye morphogenesis
GO:0051128 IEA regulation of cellular component organization
GO:0070062 IDA extracellular vesicular exosome
GO:1903225 IDA negative regulation of endodermal cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012593 col5a1 procollagen, type V, alpha 1 protein_coding Danio_rerio
ENSMUSG00000026837 Col5a1 collagen, type V, alpha 1 protein_coding Mus_musculus

Loading